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AT1G17760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit. RNA 3′-end–processing factor of antisense FLC transcript. Mediates silencing of the floral repressor gene FLC.
Computational
Description (TAIR10)
CSTF77; FUNCTIONS IN: protein binding, mRNA binding, transcription repressor activity; INVOLVED IN: RNA 3'-end processing, mRNA processing, embryo sac development; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 2092 Blast hits to 1537 proteins in 234 species: Archae - 0; Bacteria - 14; Metazoa - 771; Fungi - 713; Plants - 343; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).
Protein Annotations
BioGrid:23593eggNOG:COG5107eggNOG:KOG1914EMBL:AC034257
EMBL:AF515697EMBL:BT002320EMBL:CP002684EnsemblPlants:AT1G17760
EnsemblPlants:AT1G17760.1entrez:838354Gene3D:1.25.40.10GeneID:838354
Genevisible:Q8GUP1GO:GO:0003729GO:GO:0005634GO:GO:0006379
GO:GO:0006397GO:GO:0031047GO:GO:0031123GO:GO:0042868
GO:GO:0045892GO:GO:0060968Gramene:AT1G17760.1hmmpanther:PTHR19980
HOGENOM:HOG000030800InParanoid:Q8GUP1IntAct:Q8GUP1InterPro:IPR003107
InterPro:IPR008847InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734
KEGG:ath:AT1G17760KO:K14408MINT:MINT-7712539OMA:DTNQMIP
PaxDb:Q8GUP1Pfam:PF05843Pfam:PF13428Pfam:Q8GUP1
Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q8GUP1PIR:F86312
PRIDE:Q8GUP1PRO:PR:Q8GUP1ProteinModelPortal:Q8GUP1Proteomes:UP000006548
Reactome:R-ATH-72163Reactome:R-ATH-77595RefSeq:NP_173218.2SMART:SM00386
SMR:Q8GUP1STRING:3702.AT1G17760.1SUPFAM:SSF48452TAIR:AT1G17760
tair10-symbols:ATCSTF77tair10-symbols:CSTF77UniGene:At.27878UniGene:At.28561
UniProt:Q8GUP1
Coordinates (TAIR10) chr1:-:6110208..6116271
Molecular Weight (calculated) 82653.90 Da
IEP (calculated) 8.26
GRAVY (calculated) -0.45
Length 734 amino acids
Sequence (TAIR10)
(BLAST)
001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)