AT5G58450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: N-acetyltransferase B complex, non-catalytic subunit (InterPro:IPR019183), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23626826..23632071 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121469.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.82 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1065 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRRWGLWEQE TNVHTVAESD NFQSFPDRVE ILCLTGTESF DVKGQQLIKT LQKGFPTKFL SSQMSSKFGL AGGIPERRVR PIWDAIDSRQ FKNALKLVTS 0101: LLAKYPKSPY ALALKALIHE RMGKTDEALS VCLDAKELLY KDDLALMDDL TLSTLQIVLQ RLDHLDLATS CYAHACGKYP NNLELMMGLF NCYVREYSFV 0201: KQQQTAIKMY KLAGEERFLL WAVCSIQLQV LCDKSGEKLL LLAEGLLKKH IASHSMHEPE ALMVYISLLE QQSKYNDALE VLSGDLGSLL MIEVDKLRIQ 0301: GRLLARANDY SAAVDVYKKI LELSPDDWEC FLHYLGCLLE DDSIWKYFDN IDQIHPTKHI ECKFSHLTEE MFDSRISSAS DLVQKLQRDA ENSNLRGPYL 0401: AELEIEKRKF LFGKKNEDKL LESLLQYFLK FGHLACYASD VEAYLQVLSP NKKAGFVEML VKNSDSSASA TKVLGQTTTI LKVQELTGNI FGLPTDEIEA 0501: SAVKLAKLYC QNLSLSKDLD PQESMFGEEL LSLISNMLVQ LFWRTRDFGY LAEAIMVLEL GLTIRGHVWQ YKILLLHIYS YVGALPLAFE RYKALDVKNI 0601: LTETVSHHIL RQMLESPMWV DLSNLLKDYL KFMDDHLRES ADLTFLAYRH RNYSKVIEFV LFKQRLQHSN QYQAARVEAS VLQLKQNADS FEEEERILEN 0701: LKSGVQLVEL SNEIGSRTLK FNEDMQTRPW WTPCPEKNYL LGPFEEISYC PPKENVKEER EENMKRAIQR KSLLPRMIYL SIQCTPTALK ESVETNGSGG 0801: DIDVCEELKC LLEDYTKMLG CSLSDAVEMI TEISQGARTS ESLGSNLVDW LNFAVFWNAW SLSSQEHWHV LNSLFERLIL DRVRSMGSSD MSSCYSDVQV 0901: LVQIITEPLA WHSLIIQACT RSSLPSGKKK KKNQHSDQLS SSPISQAIKD SIQLLCSTIQ DVSNWLLNQL NNPEDGQVEG FLTTLKRDGN AAGPGQILGV 1001: LESFIASSEE SEVGNRIFQA LKSWNTADTA RKTVMAQQRV LREFLQICES KRKLLETLKQ QMSHV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)