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AT5G43620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pre-mRNA cleavage complex II
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pre-mRNA cleavage complex II; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Pre-mRNA cleavage complex II (TAIR:AT1G66500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19632eggNOG:ENOG410Y266eggNOG:KOG2071EMBL:AB016875
EMBL:AK175583EMBL:BT023453EMBL:BT025626EMBL:CP002688
EnsemblPlants:AT5G43620EnsemblPlants:AT5G43620.1entrez:834382GeneID:834382
Genevisible:Q9FIX8GO:GO:0005634GO:GO:0046872Gramene:AT5G43620.1
hmmpanther:PTHR15921hmmpanther:PTHR15921:SF4HOGENOM:HOG000152183InParanoid:Q9FIX8
IntAct:Q9FIX8InterPro:IPR007087KEGG:ath:AT5G43620KO:K14400
ncoils:CoilOMA:CYQEERNPaxDb:Q9FIX8Pfam:Q9FIX8
PhylomeDB:Q9FIX8PRIDE:Q9FIX8PRO:PR:Q9FIX8PROSITE:PS00028
ProteinModelPortal:Q9FIX8Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_199175.1
scanprosite:PS00028STRING:3702.AT5G43620.1TAIR:AT5G43620UniGene:At.50501
UniProt:Q9FIX8
Coordinates (TAIR10) chr5:+:17522653..17523885
Molecular Weight (calculated) 46051.00 Da
IEP (calculated) 9.27
GRAVY (calculated) -0.80
Length 410 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNGSFSAQ RNANAGTTMK RRNDNRGYGG GIGCYQEERN RYAPPQKRFR SQLQQQFRSG HNPLYHYGSN TNNNVSRVSS QSYNNYGVDV IASNSSFALP
101: NNDSNTNNYQ KPFVVYGNPN PQIVPLPLPY RKLDPLDSLP QWVPNSTPNY PVRSSNFVPN TPDFTNVQNP MNHSNMVSVV SQSMHQPIVL SKELTDLLSL
201: LNNEKEKKTS EASNNDSLPV GLSFDNPSSL NVRHESVIKS LYSDMPRQCT SCGVRFKCQE EHSKHMDWHV RKNRSVKTTT RLGQQPKKSR GWLASASLWL
301: CAPTGGGTVE VASFGGGEMQ KKNEKDQVQK QHMVPADEDQ KNCALCVEPF EEFFSHEADD WMYKDAVYLT KNGRIVHVKC MPEPRPAKDL REPSRVMSVT
401: VPSVAKAILC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)