AT5G43620.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pre-mRNA cleavage complex II | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pre-mRNA cleavage complex II; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Pre-mRNA cleavage complex II (TAIR:AT1G66500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:17522653..17523885 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 46051.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.27 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 410 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASNGSFSAQ RNANAGTTMK RRNDNRGYGG GIGCYQEERN RYAPPQKRFR SQLQQQFRSG HNPLYHYGSN TNNNVSRVSS QSYNNYGVDV IASNSSFALP 101: NNDSNTNNYQ KPFVVYGNPN PQIVPLPLPY RKLDPLDSLP QWVPNSTPNY PVRSSNFVPN TPDFTNVQNP MNHSNMVSVV SQSMHQPIVL SKELTDLLSL 201: LNNEKEKKTS EASNNDSLPV GLSFDNPSSL NVRHESVIKS LYSDMPRQCT SCGVRFKCQE EHSKHMDWHV RKNRSVKTTT RLGQQPKKSR GWLASASLWL 301: CAPTGGGTVE VASFGGGEMQ KKNEKDQVQK QHMVPADEDQ KNCALCVEPF EEFFSHEADD WMYKDAVYLT KNGRIVHVKC MPEPRPAKDL REPSRVMSVT 401: VPSVAKAILC |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)