AT4G02670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.957 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : indeterminate(ID)-domain 12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
indeterminate(ID)-domain 12 (IDD12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G66730.1); Has 45871 Blast hits to 18418 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 43560; Fungi - 264; Plants - 729; Viruses - 2; Other Eukaryotes - 1316 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1176190..1178489 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44515.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.41 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSSHSLSYK LSSLSTEASA SSGNNTLSTI QEFSGFHNVI SSVCTHTETH KPKKKRGLPG NPDPDAEVIA LSPKTLLATN RFVCEICNKG FQRDQNLQLH 101: RRGHNLPWKL KQKNTKEQQK KKVYVCPETN CAHHHPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKFYAV QSDWKAHTKI CGTRDYRCDC GTLFSRKDTF 201: ITHRAFCDAL AEESARLHST SSSNLTNPNP NFQGHHFMFN KSSSLLFTSS PLFIEPSLST AALSTPPTAA LSATALLQKA TSLSSTTFGG GGQTRSIGHH 301: RHLTNVNEFL GVDRVMMTSA SSSEYDQLVV DGFTSTWQKA DRLTRDFLGL TGHGGHVSVR PGDMLEYAGG VAFPMSAYDT ESHDHSFQKA YDHLGFSGAH 401: RM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)