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AT5G43920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.777
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G08560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ2UeggNOG:KOG0293EMBL:AB006703EMBL:AK227235
EMBL:CP002688EMBL:EF601122EnsemblPlants:AT5G43920EnsemblPlants:AT5G43920.1
entrez:834414Gene3D:2.130.10.10GeneID:834414Gramene:AT5G43920.1
hmmpanther:PTHR22838HOGENOM:HOG000160946InterPro:IPR001680InterPro:IPR006594
InterPro:IPR006595InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
InterPro:IPR020472KEGG:ath:AT5G43920OMA:HQNPVSFPfam:PF00400
Pfscan:PS50082Pfscan:PS50294Pfscan:PS50896Pfscan:PS50897
PhylomeDB:Q9FND4PRINTS:PR00320ProMEX:Q9FND4PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294PROSITE:PS50896PROSITE:PS50897
Proteomes:UP000006548RefSeq:NP_199205.1scanprosite:PS00678SMART:SM00320
SMART:SM00668SMR:Q9FND4STRING:3702.AT5G43920.1SUPFAM:SSF50978
TAIR:AT5G43920UniGene:At.26347UniProt:Q9FND4
Coordinates (TAIR10) chr5:+:17673397..17675630
Molecular Weight (calculated) 59124.90 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.21
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGLWEVLG SKGLLKKHEF IRILVQCLYS LGFKNSASCL EFESKILYKT ADSEFLEKQV LSGNWDSCVQ VLDRIFDNSM DDTRNTALYL VFKQCLLEYL
101: KRGDVSLALN VLRKQAPLLR MGKEKIHRLA CDIVYSKEME SGEVDNCLVL DLRRKLLVEL EKLIPLPIVI PERRLEHLVE TAVMDQIDTC MYHNSCDAVS
201: LYKDHCCGRD QIPSETVQIL VAHKNEVWFV QFSNSGKYLA TASSDCTAII WKVLDDNKVE LKHTLESHQN PVSFVSWSPD DTKLLTCGNA EVLKLWDVDT
301: GVLRHTFGNN NTGFTVSSCA WFPDSTRLVC GSSDPERGIV MWDTDGNEIK AWRGTRIPKV VDLAVTPDGE SMITVFSDKE IRILNLETKV ERVISEEQPI
401: TSLSISGDGK FFIVNLSCQE IHLWDLAGEW KQPLKFSGHR QSKYVIRSCF GGLDSSFIAS GSEDSQVYIW NLKNTKPLEV LSGHSMTVNC VSWNPKNPRM
501: LASASDDQTI RIWGPGKPNK PLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)