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AT5G61230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.480
nucleus 0.301
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G07840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DIP:DIP-60439NeggNOG:COG0666eggNOG:KOG0504EMBL:AB006696
EMBL:AY039615EMBL:AY078023EMBL:CP002688EnsemblPlants:AT5G61230
EnsemblPlants:AT5G61230.1entrez:836244Gene3D:1.25.40.20GeneID:836244
GO:GO:0005634GO:GO:0005739GO:GO:0009553GO:GO:0009567
GO:GO:0080173Gramene:AT5G61230.1hmmpanther:PTHR24188HOGENOM:HOG000238710
IntAct:Q9FNP4InterPro:IPR002110InterPro:IPR020683KEGG:ath:AT5G61230
OMA:WNPLHIKPfam:PF12796Pfscan:PS50088Pfscan:PS50297
PhylomeDB:Q9FNP4PRINTS:PR01415PROSITE:PS50088PROSITE:PS50297
Proteomes:UP000006548RefSeq:NP_200931.1SMART:SM00248SMR:Q9FNP4
STRING:3702.AT5G61230.1SUPFAM:SSF48403TAIR:AT5G61230UniGene:At.22973
UniProt:Q9FNP4
Coordinates (TAIR10) chr5:+:24628254..24628778
Molecular Weight (calculated) 19207.50 Da
IEP (calculated) 8.26
GRAVY (calculated) -0.64
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MLQEPSAAFS LRRNSFRRRS PRSNVDDRGW NPLHIKARKG DLKSVKQLLD QGMDVNALAW GPKSKGVSAL HLAAEGGHIE VMDLLLERGA NIDAKTWGSC
101: GWTPLHAAAK ERKREAVKFL VENGAFLADD ITDTRFNPPV HYCHGLEWAY EEMKKLNSES SSSSGGDTSS SSDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)