AT1G72710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : casein kinase 1-like protein 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
casein kinase 1-like protein 2 (CKL2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase 1 (TAIR:AT4G26100.1); Has 69362 Blast hits to 63919 proteins in 2309 species: Archae - 34; Bacteria - 10202; Metazoa - 23661; Fungi - 6612; Plants - 12027; Viruses - 386; Other Eukaryotes - 16440 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27372553..27376178 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51881.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 465 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL 101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF 201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS 301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV 401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)