AT3G13340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G55680.1); Has 21298 Blast hits to 10067 proteins in 523 species: Archae - 80; Bacteria - 6953; Metazoa - 5235; Fungi - 4425; Plants - 1789; Viruses - 0; Other Eukaryotes - 2816 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4332370..4334603 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50620.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.64 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||
| Length | 447 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNYRGDDAE YMEDVDDEME DVEDDMDEEF RGDDLGASDS DVEEFDYSNN KVADTTAEQA RKGKDIQGIP WDRLNISREK YRQTRLEQYK NYENVPNSGE 101: SSEKVCKVTQ KGGLFYDFWR NSRSIKSTIL HFQLRNLVWA TSKHDVYLMS NFLVTHYSSL TSGKHEVLNV RGHVAPSEKH PGSLLEGFTQ TQVSTLAVKD 201: DFLVAGGFQG ELICKHLDRP GVSFCSRMTY DDNAITNAIE IYNKPSGALH FTASNNDCGV RDFDMERYQL VKHFRFPWPV NHASLSPDGK LLAIVGDNPE 301: GLIVDPNTGK TLETLSGHLD FSFASAWHPD GVTFSTGNQD KTCRVWDIRN LSQSVTVLKG NLGAIRSIRY TSDGKYMAMA EPADFVHVYD VSNGYETEQE 401: IDFFGEISGI SFSPDTEALF IGVWDRTYGS LLEFGRRRNY SYLDSYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)