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AT1G33980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Smg-4/UPF3 family protein
Curator
Summary (TAIR10)
Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD)
Computational
Description (TAIR10)
UPF3; FUNCTIONS IN: nucleotide binding; INVOLVED IN: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Regulator of nonsense-mediated decay, UPF3 (InterPro:IPR005120); Has 779 Blast hits to 748 proteins in 191 species: Archae - 0; Bacteria - 17; Metazoa - 416; Fungi - 147; Plants - 73; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41122XDeggNOG:KOG1295EMBL:AC015446EMBL:AC079286
EMBL:AY128383EMBL:BT000112EMBL:CP002684EnsemblPlants:AT1G33980
EnsemblPlants:AT1G33980.1entrez:840295Gene3D:3.30.70.330GeneID:840295
Genevisible:Q9FVW4GO:GO:0000166GO:GO:0000184GO:GO:0003723
GO:GO:0005730GO:GO:0005737GO:GO:0009611GO:GO:0009863
GO:GO:0009867GO:GO:0042742GO:GO:0048571GO:GO:0051028
hmmpanther:PTHR13112hmmpanther:PTHR13112:SF0HOGENOM:HOG000006277InParanoid:Q9FVW4
InterPro:IPR005120InterPro:IPR012677iPTMnet:Q9FVW4KEGG:ath:AT1G33980
KO:K14328OMA:RAGKDYHPaxDb:Q9FVW4Pfam:PF03467
Pfam:Q9FVW4PhylomeDB:Q9FVW4PIR:E86463PRIDE:Q9FVW4
PRO:PR:Q9FVW4ProteinModelPortal:Q9FVW4Proteomes:UP000006548Reactome:R-ATH-72163
Reactome:R-ATH-72187Reactome:R-ATH-975957RefSeq:NP_001117406.1RefSeq:NP_174660.2
SMR:Q9FVW4STRING:3702.AT1G33980.2SUPFAM:SSF54928TAIR:AT1G33980
tair10-symbols:ATUPF3tair10-symbols:UPF3UniGene:At.21064UniProt:Q9FVW4
Coordinates (TAIR10) chr1:+:12351719..12354401
Molecular Weight (calculated) 53806.90 Da
IEP (calculated) 10.73
GRAVY (calculated) -1.13
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MKEPLQKKKV VVRHLPPSLS QSDLLSQIDP RFADRYNWVS FRPGKSSYKN QKYSRAYVSF KAPEDVYEFA AFFNGHVFVN EKGAQFKAIV EYAPSQRVPK
101: PSDKKDPREG SISKDPDYLE FLKVIAQPVE NLPSAEIQLE RREAEQSGAS KAAPIVTPLM EFIRQKRATV MGPQGLSDIR RGGRRTRVVS ANKPSPRPSK
201: RNSEKKKYVE KESSKNVPRK TTADVSSSKP DYRQSNSSGK ELPGNETAAI IDSSPPGIAL TMDSGKKKIL LLRSKDRDNP DNPPPQPEQH IDTNLSRNST
301: DSRQNQKSDV GGRLIKGILL RNDSRPSQSS TFVQSEQRVE PSEAENYKRP SRPANTRAGK DYHTSGTISE KQERRTRNKD RPDRVMWAPR RDGSEDQPLS
401: SAGNNGEVKD RMFSQRSGEV VNSSGGHTLE NGSARHSSRR VGGRNRKEEV VIGEGKTSRR GSGGGPSSHE KQMWIQKPSS GT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)