AT1G55680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G13340.2); Has 20114 Blast hits to 9589 proteins in 506 species: Archae - 80; Bacteria - 6727; Metazoa - 4776; Fungi - 4188; Plants - 1687; Viruses - 0; Other Eukaryotes - 2656 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20804988..20807294 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50310.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.60 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||
| Length | 445 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNYQGDDAE YMEDVDDEMD EDDLDEDFRG DDMAASDSDV DEFDYSNNKI ADTSADQARK GKDIQGIPWD RLSITRETYR QTRLEQYKNY ENVPNSGESS 101: GKDCMATQKG ALFYDFWRNT RSIKSSILHF QLRNLVWATS KHDVYLMSQY LVSHYSTLTS GKHDVLNVQG HVSPSEKHPG SLLEGFTKTQ VSTLAVRDKF 201: LVAGGFQGEL ICKHLDRPGV SFCSRTTYDD NAITNAIEIY NKPSGALHFT ASNNDCGVRD FDMERYQLVN QFRFPWPVNH TSLSPDGKLL TIVGDNPESL 301: LVDPNTGKTL ATLSGHLDFS FASAWHPDGF TFSTGNQDKT CRVWDIRNLS KSVAVLRGNL GAIRSIRYTS DGKYMAMAEP ADFVHVYDVS NGYETEQEID 401: FFGEISGISF SPDTEALFIG VWDRTYGSLI EYSRRHNYSY LDSFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)