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AT2G37570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene.
Computational
Description (TAIR10)
sodium- and lithium-tolerant 1 (SLT1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G02480.1); Has 106 Blast hits to 104 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IPA1eggNOG:ENOG4110EQUEMBL:AC004684EMBL:AF213400
EMBL:AY054667EMBL:AY081508EMBL:CP002685EnsemblPlants:AT2G37570
EnsemblPlants:AT2G37570.1entrez:818333ExpressionAtlas:O80926GeneID:818333
GO:GO:0042538Gramene:AT2G37570.1hmmpanther:PTHR33981hmmpanther:PTHR33981:SF3
HOGENOM:HOG000237499InterPro:IPR008978KEGG:ath:AT2G37570OMA:FSRSHRM
PhylomeDB:O80926PIR:T02523Proteomes:UP000006548RefSeq:NP_565864.1
STRING:3702.AT2G37570.1SUPFAM:SSF49764TAIR:AT2G37570tair10-symbols:SLT1
UniGene:At.12789UniGene:At.74051UniProt:O80926
Coordinates (TAIR10) chr2:-:15761466..15762950
Molecular Weight (calculated) 55827.10 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.57
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MENHHPSTLL SMDSSASSHE ELDLEMNNNR QSLLSGPPDI NLPLSAERSP PPPPWNLDAC DILDVGLGSQ AYETENYMSV VPKVGRKCAK RVDSIWGAWF
101: FFSFYFKPAL NEKSKAKIVR DSNGISGFDK SDLKLDVFLV QHDMENMYMW VFKERPENAL GKMQLRSYMN GHSRQGDRLF PFSVEKGFVR SHRMQRKHYR
201: GLSNPQCVHG IELVPLPNLT CLDEEERKRW MELTGRDLNF TIPPEASDFG SWRNLPNTDF ELERPTPSLK NPTANHSKKL LNGSGLNLST QPSNHSNGEA
301: TDLSPSSHKK RKDLFSNGIH EEECCLTVNP QPPVIEAHQN ELPTWSNEFT GAMKNVYGPV TAAKTIYEDE EGYLIIISLP FVDLNSVKVS WRNTLTHGII
401: KVSCLSTSRV PFIKRHDRTF KLTDSASEHC PPGEFVREIP LSNRIPEDAN IEAYYDGPGS VLEILVPKLR AGPEEHEVRV CLRPNLGGND LMLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)