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AT2G37580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G17905.1); Has 8117 Blast hits to 8098 proteins in 285 species: Archae - 0; Bacteria - 0; Metazoa - 1838; Fungi - 580; Plants - 4554; Viruses - 68; Other Eukaryotes - 1077 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC004684EMBL:AY084758
EMBL:BT024849EMBL:CP002685EnsemblPlants:AT2G37580EnsemblPlants:AT2G37580.1
entrez:818334Gene3D:3.30.40.10GeneID:818334Genevisible:O80927
GO:GO:0008270GO:GO:0016021GO:GO:0016567Gramene:AT2G37580.1
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF94HOGENOM:HOG000029123InParanoid:O80927
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT2G37580OMA:KEIGNEC
PaxDb:O80927Pfam:O80927Pfam:PF13639Pfscan:PS50089
PhylomeDB:O80927PIR:T02524PRO:PR:O80927PROSITE:PS50089
ProteinModelPortal:O80927Proteomes:UP000006548RefSeq:NP_565865.1SMART:SM00184
SMR:O80927SUPFAM:SSF57850TAIR:AT2G37580TMHMM:TMhelix
UniGene:At.37407UniPathway:UPA00143UniProt:O80927
Coordinates (TAIR10) chr2:+:15764745..15765452
Molecular Weight (calculated) 25205.50 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.22
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MFNNTTTSFG SGPGIVVVPT PATTVPTTDF PGTTITSNST FIIIGPPPPF PAPPRSIDLT PLKLIFVVIA FVAVPALVYA LFFNGPCSSS RRNSSSSRTS
101: SSSDDTPHAT VDTPPITETT VTSESGGKFH KDTHSKEIGN ECSVCLMVFT DSDELRQLSE CKHAFHVLCI ETWLKDHPNC PICRTDVSVK QQTEAPNVPV
201: NVNGNVNRSG GNRRVSATSR DDDWRQGLPD ASSLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)