suba logo
AT3G01930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 0.507
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G14120.1); Has 2385 Blast hits to 2366 proteins in 748 species: Archae - 24; Bacteria - 1277; Metazoa - 8; Fungi - 194; Plants - 581; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKPCeggNOG:ENOG410XR5AEMBL:CP002686EnsemblPlants:AT3G01930
EnsemblPlants:AT3G01930.1entrez:821218ExpressionAtlas:F4JD50GeneID:821218
GO:GO:0016021Gramene:AT3G01930.1hmmpanther:PTHR21576hmmpanther:PTHR21576:SF44
InterPro:IPR010658InterPro:IPR020846PaxDb:F4JD50Pfam:PF06813
PRIDE:F4JD50ProteinModelPortal:F4JD50Proteomes:UP000006548RefSeq:NP_850497.1
SUPFAM:SSF103473TAIR:AT3G01930TMHMM:TMhelixUniGene:At.41213
UniGene:At.48610UniGene:At.69431UniProt:F4JD50
Coordinates (TAIR10) chr3:-:319289..320777
Molecular Weight (calculated) 51129.60 Da
IEP (calculated) 7.04
GRAVY (calculated) 0.47
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MCILIFVGNN GETYFNTAAL VSGVQNFPKS RGPVVGILKG FAGLGGAILS QVYTMIHSSD RASLIFMVAV APSVVVVPLM FFIRPVGGHR QIRSSDATSF
101: TVIYAVCILL AAYLMAVMLV EDFIDLSHSI IIAFTVVLFA ILLVPIFIPI ATSCFTASTD PCDTLEEPLL GDQQGQDPGQ STTPDHGPEL IFSEVEDEKP
201: KEVDLLPAVE RHKRIAQLQA KLMQAAAEGA VRVKRRRGPH RGEDFTLTQA LVKADFWLIF FSLLLGSGSG LTVIDNLGQM SQSLGYDNTH VFVSMISIWN
301: FLGRIGGGYF SELIVRDYAY PRPVAIAVAQ LVMSVGHIFF AYGWPGAMHI GTLLIGLGYG AHWAIVPATA SELFGLKKFG ALYNFLTLAN PAGSLVFSGL
401: IASSIYDREA ERQAQGSLFN PDDVLRCRGS ICYFLTSLIM SGFCLIAAAL SMILVQRTKP VYTNLYGKTR N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)