AT2G36380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pleiotropic drug resistance 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pleiotropic drug resistance 6 (PDR6); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15257583..15263627 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 164215.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.67 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1453 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLGRDEDLVR TMSGRGSLGS TSHRSLAGAA SKSFRDVFAP PTDDVFGRSD RREEDDVELR WAALERLPTY DRLRKGMLPQ TMVNGKIGLE DVDVTNLAPK 0101: EKKHLMEMIL KFVEEDNEKF LRRLRERTDR VGIEVPKIEV RYENLSVEGD VRSASRALPT LFNVTLNTIE SILGLFHLLP SKKRKIEILK DISGIIKPSR 0201: MTLLLGPPSS GKTTLLQALA GKLDDTLQMS GRITYCGHEF REFVPQKTCA YISQHDLHFG EMTVRESLDF SGRCLGVGTR YQLLTELSRR EREAGIKPDP 0301: EIDAFMKSIA ISGQETSLVT DYVLKLLGLD ICADTLVGDV MRRGISGGQR KRLTTGEMLV GPATALFMDE ISTGLDSSTT FQICKFMRQL VHIADVTMVI 0401: SLLQPAPETF ELFDDIILLS EGQIVYQGSR DNVLEFFEYM GFKCPERKGI ADFLQEVTSK KDQEQYWNRR EHPYSYVSVH DFSSGFNSFH AGQQLASEFR 0501: VPYDKAKTHP AALVTQKYGI SNKDLFKACF DREWLLMKRN SFVYVFKTVQ ITIMSLIAMT VYFRTEMHVG TVQDGQKFYG ALFFSLINLM FNGMAELAFT 0601: VMRLPVFFKQ RDFLFYPPWA FALPGFLLKI PLSLIESVIW IALTYYTIGF APSAARFFRQ LLAYFCVNQM ALSLFRFLGA LGRTEVIANS GGTLALLVVF 0701: VLGGFIISKD DIPSWLTWCY YTSPMMYGQT ALVINEFLDE RWGSPNNDTR INAKTVGEVL LKSRGFFTEP YWFWICIGAL LGFTVLFNFC YIIALMYLNP 0801: LGNSKATTVV EEGKDKHKGS HSGTGGSVVE LTSTSSHGPK KGMVLPFQPL SLAFNNVNYY VDMPAEMKAQ GVEGDRLQLL RDVGGAFRPG VLTALVGVSG 0901: AGKTTLMDVL AGRKTGGYVE GSINISGYPK NQATFARVSG YCEQNDIHSP HVTVYESLIY SAWLRLSADI DTKTREMFVE EVMELVELKP LRNSIVGLPG 1001: VDGLSTEQRK RLTIAVELVA NPSIIFMDEP TSGLDARAAA IVMRTVRNTV DTGRTVVCTI HQPSIDIFES FDELLLMKRG GQVIYAGTLG HHSQKLVEYF 1101: EAIEGVPKIK DGYNPATWML DVTTPSMESQ MSVDFAQIFV NSSVNRRNQE LIKELSTPPP GSNDLYFRTK YAQPFSTQTK ACFWKMYWSN WRYPQYNAIR 1201: FLMTVVIGVL FGLLFWQTGT KIEKEQDLNN FFGAMYAAVL FLGATNAATV QPAVAIERTV FYREKAAGMY SAIPYAISQV AVEIMYNTIQ TGVYTLILYS 1301: MIGYDWTVVK FFWFYYYMLT CFVYFTLYGM MLVALTPNYQ IAGICLSFFL SFWNLFSGFL IPRPQIPIWW RWYYWASPVA WTLYGIITSQ VGDRDSIVHI 1401: TGVGDMSLKT LLKNGFGFDY DFLPVVAVVH IAWILIFLFA FAYGIKFLNF QRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)