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AT5G10820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.967
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G79710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16227eggNOG:ENOG410IH76eggNOG:ENOG410YDPXEMBL:AL365234
EMBL:BX830317EMBL:CP002688EnsemblPlants:AT5G10820EnsemblPlants:AT5G10820.1
entrez:830949GeneID:830949Genevisible:Q9LEV7GO:GO:0006810
GO:GO:0016021Gramene:AT5G10820.1hmmpanther:PTHR31585hmmpanther:PTHR31585:SF3
HOGENOM:HOG000240899InParanoid:Q9LEV7InterPro:IPR004324InterPro:IPR020846
iPTMnet:Q9LEV7KEGG:ath:AT5G10820OMA:FFVHHLGPaxDb:Q9LEV7
Pfam:PF03092Pfam:Q9LEV7PhylomeDB:Q9LEV7PIR:T50791
PRIDE:Q9LEV7PRO:PR:Q9LEV7ProteinModelPortal:Q9LEV7Proteomes:UP000006548
RefSeq:NP_196643.1SMR:Q9LEV7STRING:3702.AT5G10820.1SUPFAM:SSF103473
TAIR:AT5G10820TIGRfam:TIGR00788TIGRFAMs:TIGR00788TMHMM:TMhelix
UniGene:At.50446UniProt:Q9LEV7
Coordinates (TAIR10) chr5:-:3420876..3423166
Molecular Weight (calculated) 55816.90 Da
IEP (calculated) 8.35
GRAVY (calculated) 0.51
Length 503 amino acids
Sequence (TAIR10)
(BLAST)
001: METLETEKFF SDDKPLLKPI SDHSEIKTKA RRNAVVSVLI QPFQWLQMLS SRLNLSFVLG VVLVYGVNQG FSGSIFKVVT DYYWKDVQQV QPSVVQLYMG
101: LYYIPWVMRP IWGLFTDVFP IKGYKRKPYF VVSGVLGLVS AIAIVVLGKL PAALALSCLL GVSAAMAIAD VVIDACIATN SINIRSLAPD IQSLCMVCSS
201: AGALVGYATS GVFVHQLGPQ GALGVLAFSP ATIVILGFFI YEKRSSTVPT QKTKKDTDGL GVAVKGMCKT VKYPEVWKPS LYMFISLALN ISTHEGHFYW
301: YTDPTAGPAF SQEFVGIIYA VGALASMFGV LIYHKKLKGY SFRNILFFAQ LLYVFSGMLD LVFIKRWNLT LGIPDSLFVI TEESFTKMIS KIRWIPMVVL
401: STRLCPLGIE GTFFAFLMCI DSFGQLASKW GGGFVLHAFG VTRHDFGNLW LVILIRNILR LVTVCFVFLV PDSDHLDDLV PSDVLPKKQS EDDDDDDIKL
501: LLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)