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AT3G25730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ethylene response DNA binding factor 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ethylene response DNA binding factor 3 (EDF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: cotyledon, hypocotyl, root, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to ABI3/VP1 1 (TAIR:AT1G13260.1); Has 6965 Blast hits to 6489 proteins in 279 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6930; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIT9eggNOG:ENOG4110AU5EMBL:AB028607EMBL:AJ441073
EMBL:AK229415EMBL:AY087951EMBL:CP002686EnsemblPlants:AT3G25730
EnsemblPlants:AT3G25730.1entrez:822164Gene3D:2.40.330.10Gene3D:3.30.730.10
GeneID:822164Genevisible:Q9LS06GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873GO:GO:0044212Gramene:AT3G25730.1
hmmpanther:PTHR31140hmmpanther:PTHR31140:SF3HOGENOM:HOG000237484InterPro:IPR001471
InterPro:IPR003340InterPro:IPR015300InterPro:IPR016177KEGG:ath:AT3G25730
KO:K09287OMA:KHTYKEEPaxDb:Q9LS06Pfam:PF00847
Pfam:PF02362Pfam:Q9LS06Pfscan:PS50863Pfscan:PS51032
PhylomeDB:Q9LS06PRO:PR:Q9LS06PROSITE:PS50863PROSITE:PS51032
ProteinModelPortal:Q9LS06Proteomes:UP000006548RefSeq:NP_189201.1SMART:SM00380
SMART:SM01019SMR:Q9LS06STRING:3702.AT3G25730.1SUPFAM:SSF101936
SUPFAM:SSF54171TAIR:AT3G25730tair10-symbols:EDF3UniGene:At.37331
UniProt:Q9LS06
Coordinates (TAIR10) chr3:+:9396505..9397506
Molecular Weight (calculated) 37757.90 Da
IEP (calculated) 9.72
GRAVY (calculated) -0.53
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAMSSVDES STTTDSIPAR KSSSPASLLY RMGSGTSVVL DSENGVEVEV EAESRKLPSS RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD
101: VAAHRFRGRD AVTNFKDTTF EEEVEFLNAH SKSEIVDMLR KHTYKEELDQ RKRNRDGNGK ETTAFALASM VVMTGFKTAE LLFEKTVTPS DVGKLNRLVI
201: PKHQAEKHFP LPLGNNNVSV KGMLLNFEDV NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KRLCAGDLIS FKRSNDQDQK FFIGWKSKSG LDLETGRVMR
301: LFGVDISLNA VVVVKETTEV LMSSLRCKKQ RVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)