suba logo
AT5G03700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 17317660
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; INVOLVED IN: recognition of pollen; LOCATED IN: plasma membrane; EXPRESSED IN: stem, sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-1 domain (InterPro:IPR003014), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-domain-2 5 (TAIR:AT4G32300.1); Has 2091 Blast hits to 2063 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2091; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFD1eggNOG:ENOG410Y9E1EMBL:AL162506EMBL:CP002688
EnsemblPlants:AT5G03700EnsemblPlants:AT5G03700.1entrez:831753Gene3D:2.90.10.10
GeneID:831753Genevisible:Q9LZR8GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0005886GO:GO:0016021GO:GO:0048544
Gramene:AT5G03700.1hmmpanther:PTHR11795hmmpanther:PTHR11795:SF386HOGENOM:HOG000239120
InParanoid:Q9LZR8InterPro:IPR000858InterPro:IPR001480InterPro:IPR003609
iPTMnet:Q9LZR8KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1KEGG:ath:AT5G03700
OMA:WVLDYQAPaxDb:Q9LZR8Pfam:PF00024Pfam:PF00954
Pfam:PF01453Pfam:Q9LZR8Pfscan:PS50948PhylomeDB:Q9LZR8
PIR:T48397PRIDE:Q9LZR8PRO:PR:Q9LZR8PROSITE:PS50948
ProteinModelPortal:Q9LZR8Proteomes:UP000006548RefSeq:NP_195990.1SUPFAM:SSF51110
TAIR:AT5G03700TMHMM:TMhelixUniGene:At.65485UniProt:Q9LZR8
Coordinates (TAIR10) chr5:-:965874..967322
Molecular Weight (calculated) 53598.10 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.14
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGLCLNSFT RVLLLLFVFL VFSHKWQRVN AVEPVLELVK GFEAKPDSSI DSFQPLLTDS NGNFSFGFLR VNGSRLSLAV THPNLTDPLW VLDPTRSASW
101: SHKTKLFFNG SLVIIDPSSR LEWSTHTNGD RLILRNDSNL QVVKTSTFVE WESFDFPGNT LVESQNFTSA MALVSPNGLY SMRLGSDFIG LYAKVSEESQ
201: QFYWKHSALQ AKAKVKDGAG PILARINPNG YLGMYQTGSI PIDVEAFNSF QRPVNGLLIL RLESDGNLRG YLWDGSHWAL NYEAIRETCD LPNPCGPYSL
301: CTPGSGCSCI DNRTVIGECT HAASSPADFC DKTTEFKVVR RDGVEVPFKE LMDHKTTSSL GECEEMCVDN CKCFGAVYNN GSGFCYLVNY PIRTMLGVAD
401: PSKLGYFKVR EGVGKKKSRV GLTVGMSLLA VIALVLMVAM VYVGFRNWRR EKRVLEEDNG LSPGPYKNLG SDSFNSVEMS RR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)