AT5G60300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Concanavalin A-like lectin protein kinase family protein | ||||||||||||
| Curator Summary (TAIR10) |
Lectin Receptor Kinase involved in protein-protein interactions with RGD-containing proteins as potential ligands. Role in cell wall-plasma membrane adhesion. | ||||||||||||
| Computational Description (TAIR10) |
Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: focal adhesion assembly; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Legume lectin, beta chain, Mn/Ca-binding site (InterPro:IPR019825); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT3G45430.1); Has 112358 Blast hits to 111080 proteins in 4130 species: Archae - 91; Bacteria - 13102; Metazoa - 40494; Fungi - 9266; Plants - 33404; Viruses - 365; Other Eukaryotes - 15636 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24264862..24267018 | ||||||||||||
| Molecular Weight (calculated) | 79487.20 Da | ||||||||||||
| IEP (calculated) | 7.00 | ||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||
| Length | 718 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARWLLQILI ISSLHLSSVS SQQETSFVYE SFLDRQNLYL DKSAIVLPSG LLQLTNASEH QMGHAFHKKP IEFSSSGPLS FSTHFVCALV PKPGFEGGHG 101: IVFVLSPSMD FTHAESTRYL GIFNASTNGS SSYHVLAVEL DTIWNPDFKD IDHNHVGIDV NSPISVAIAS ASYYSDMKGS NESINLLSGN PIQVWVDYEG 201: TLLNVSVAPL EVQKPTRPLL SHPINLTELF PNRSSLFAGF SAATGTAISD QYILWWSFSI DRGSLQRLDI SKLPEVPHPR APHKKVSTLI ILLPVCLAIL 301: VLAVLAGLYF RRRRKYSEVS ETWEKEFDAH RFSYRSLFKA TKGFSKDEFL GKGGFGEVYR GNLPQGREIA VKRVSHNGDE GVKQFVAEVV SMRCLKHRNL 401: VPLFGYCRRK RELLLVSEYM PNGSLDEHLF DDQKPVLSWS QRLVVVKGIA SALWYLHTGA DQVVLHRDVK ASNIMLDAEF HGRLGDFGMA RFHEHGGNAA 501: TTAAVGTVGY MAPELITMGA STGTDVYAFG VFMLEVTCGR RPVEPQLQVE KRHMIKWVCE CWKKDSLLDA TDPRLGGKFV AEEVEMVMKL GLLCSNIVPE 601: SRPTMEQVVL YLNKNLPLPD FSPYTLGIGT FAPVLVDASS LVVSSASWSL SGPSMSSSSP NHSPYAWQST DQPWGQTIDT KNSLHIVAEP EKPSPAVKMV 701: TLPAEDPQSN HSSISSQR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)