suba logo
AT5G63970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Copine (Calcium-dependent phospholipid-binding protein) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPC8eggNOG:KOG1327EMBL:AY090939EMBL:AY123020
EMBL:CP002688EnsemblPlants:AT5G63970EnsemblPlants:AT5G63970.1EnsemblPlants:AT5G63970.2
entrez:836518Gene3D:3.30.40.10GeneID:836518GO:GO:0004842
GO:GO:0008270GO:GO:0009611GO:GO:0009867GO:GO:0016567
GO:GO:0016874GO:GO:0042742Gramene:AT5G63970.1Gramene:AT5G63970.2
hmmpanther:PTHR10857hmmpanther:PTHR10857:SF18InterPro:IPR001841InterPro:IPR002035
InterPro:IPR010734InterPro:IPR013083KEGG:ath:AT5G63970OMA:LIYAAMS
Pfam:PF07002Pfam:PF13920Pfscan:PS50089PhylomeDB:Q8RX26
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_001032132.1RefSeq:NP_201202.2
SMART:SM00327SMR:Q8RX26STRING:3702.AT5G63970.1SUPFAM:SSF53300
SUPFAM:SSF57850TAIR:AT5G63970UniGene:At.28971UniProt:Q8RX26
Coordinates (TAIR10) chr5:-:25607006..25608916
Molecular Weight (calculated) 41191.20 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.37
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)