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AT4G15230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pleiotropic drug resistance 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pleiotropic drug resistance 2 (PDR2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, drug transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 13 (TAIR:AT4G15215.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12484eggNOG:COG0842eggNOG:KOG0065EMBL:AK117203
EMBL:AL161540EMBL:BK001000EMBL:CP002687EMBL:Z97338
EnsemblPlants:AT4G15230EnsemblPlants:AT4G15230.1entrez:827187Gene3D:3.40.50.300
GeneID:827187Genevisible:Q8GZ52GO:GO:0005524GO:GO:0006810
GO:GO:0016021GO:GO:0016887hmmpanther:PTHR19241hmmpanther:PTHR19241:SF236
HOGENOM:HOG000238051InParanoid:Q8GZ52InterPro:IPR003439InterPro:IPR003593
InterPro:IPR013525InterPro:IPR013581InterPro:IPR027417InterPro:IPR029481
KEGG:ath:AT4G15230MINT:MINT-8069959OMA:KSSMPAWPaxDb:Q8GZ52
Pfam:PF00005Pfam:PF01061Pfam:PF08370Pfam:PF14510
Pfam:Q8GZ52Pfscan:PS50893PIR:C71416PIR:D71416
PIR:G85167PRIDE:Q8GZ52PRO:PR:Q8GZ52PROSITE:PS50893
ProteinModelPortal:Q8GZ52Proteomes:UP000006548RefSeq:NP_193258.3SMART:SM00382
STRING:3702.AT4G15230.1SUPFAM:SSF52540TAIR:AT4G15230tair10-symbols:ATPDR2
tair10-symbols:PDR2TMHMM:TMhelixUniGene:At.33200UniProt:Q8GZ52
Coordinates (TAIR10) chr4:+:8680295..8686880
Molecular Weight (calculated) 157776.00 Da
IEP (calculated) 8.36
GRAVY (calculated) 0.08
Length 1400 amino acids
Sequence (TAIR10)
(BLAST)
0001: MIQTGEEDEE KATSLEVEFA SGNGVDDEEE LRLQWATVER LPTFKRVTTA LLARDEVSGK GRVIDVTRLE GAERRLLIEM LVKQIEDDNL RLLRKIRKRI
0101: DKVGIELPTV EVRFNNLSVE AECQVIHGKP IPTLWNTIKG LLSEFICSKK ETKIGILKGV SGIVRPGRMT LLLGPPGCGK TTLLQALSGK FSDSVKVGGE
0201: VCYNGCSLSE FIPEKTSSYI SQNDLHIPEL SVRETLDFSA CCQGIGSRME IMKEISRMEK LQEIIPDPAV DAYMKATSVE GLKNNLQTDY ILKILGLDIC
0301: ADTRVGDATR PGISGGEKRR LTTGELVVGP ATTLFMDEIS NGLDSSTTFQ IVSCLQQLAH IAEATILISL LQPAPETFEL FDDVILMGEG KIIYHAPRAD
0401: ICRFFEEFGF KCPERKGVAD FLQEIMSKKD QEQYWCHRDK PYSYISVDSF INKFKESNLG LLLKEELSKP FNKSQTRKDG LCYKKYSLGK WEMLKACSRR
0501: EFLLMKRNSF IYLFKSALLV FNALVTMTVF LQVGATTDSL HGNYLMGSLF TALFRLLADG LPELTLTISR LGVFCKQKDL YFYPAWAYAI PSIILKIPLS
0601: VLDSFIWTLL TYYVIGYSPE VKRFFLQFLI LSTFNLSCVS MFRAIAAIFR TIIASTITGA ISILVLSLFG GFVIPKSSMP AWLGWGFWLS PLSYAEIGLT
0701: ANEFFSPRWS KVISSKTTAG EQMLDIRGLN FGRHSYWTAF GALVGFVLFF NALYVLALTY QNNPQRSRAI ISHEKYSRPI EEDFKPCPKI TSRAKTGKII
0801: LPFKPLTVTF QNVQYYIETP QGKTRQLLSD ITGALKPGVL TSLMGVSGAG KTTLLDVLSG RKTRGIIKGE IKVGGYPKVQ ETFARVSGYC EQFDIHSPNI
0901: TVEESLKYSA WLRLPYNIDS KTKNELVKEV LETVELDDIK DSVVGLPGIS GLSIEQRKRL TIAVELVANP SIIFMDEPTT GLDARAAAIV MRAVKNVAET
1001: GRTVVCTIHQ PSIDIFETFD ELILMKNGGQ LVYYGPPGQN SSKVIEYFES FSGLPKIQKN CNPATWILDI TSKSAEEKLG IDFSQSYKDS TLYKQNKMVV
1101: EQLSSASLGS EALRFPSQFS QTAWVQLKAC LWKQHYSYWR NPSHNITRIV FILLDSTLCG LLFWQKAEDI NNQQDLISIF GSMYTLVVFP GMNNCAAVIN
1201: FIAAERNVFY RERFARMYSS WAYSFSQVLI EVPYSLLQSL LCTIIVYPTI GYHMSVYKMF WSLYSIFCSL LIFNYSGMLM VALTPNIHMA VTLRSSFFSM
1301: LNLFAGFVIP KQKIPKWWIW MYYLSPTSWV LEGLLSSQYG DVDKEILVFG EKKRVSAFLE DYFGYKHESL AVVAFVLIAY PIIVATLFAF FMSKLSFQKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)