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AT1G55240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.946
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Family of unknown function (DUF716)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Family of unknown function (DUF716) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55230.1); Has 435 Blast hits to 434 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITNEeggNOG:ENOG4111FW3EMBL:AK228776EMBL:BT011215
EMBL:BT012146EMBL:CP002684EnsemblPlants:AT1G55240EnsemblPlants:AT1G55240.1
entrez:841967GeneID:841967GO:GO:0016021Gramene:AT1G55240.1
hmmpanther:PTHR16007hmmpanther:PTHR16007:SF29HOGENOM:HOG000242848InterPro:IPR006904
KEGG:ath:AT1G55240OMA:GENVEYSPANTHER:PTHR16007Pfam:PF04819
PhylomeDB:Q6NM31Proteomes:UP000006548RefSeq:NP_175920.2TAIR:AT1G55240
TMHMM:TMhelixUniGene:At.37095UniProt:Q6NM31
Coordinates (TAIR10) chr1:+:20605015..20606185
Molecular Weight (calculated) 35028.70 Da
IEP (calculated) 7.33
GRAVY (calculated) 0.33
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSFLGHVLP GFAFVALGLW HLFNNIKLFC LHPNTFSSST WFPISKLRHL ELYLIMLSST ASISMELFIG PRRHHPFDVD GTIPSNHLHN FEHSSISMSF
101: LVYAVLALVL DRARPRAAAS EGLTMLAAAA AFSQQLLLFH FHSTDHMGVE GQYHVILQVV IFVSLLTTIM GIFLPKSFLV SLVRSSSIAF QGVWLIVIGC
201: MLYTPSLIPK GCYIHDEGRH IIVKCSTEEA LHRAKSLVNL EFSWLFVTNT LFVVTLYLIL DRVYGENVEY SSLTTNNQTY QDDEEQHFES KSTQKTSFVQ
301: MGKLVGHGQK M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)