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AT1G78660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gamma-glutamyl hydrolase 1
Curator
Summary (TAIR10)
The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.
Computational
Description (TAIR10)
gamma-glutamyl hydrolase 1 (GGH1); CONTAINS InterPro DOMAIN/s: Peptidase C26, gamma-glutamyl hydrolase (InterPro:IPR015527), Peptidase C26 (InterPro:IPR011697); BEST Arabidopsis thaliana protein match is: gamma-glutamyl hydrolase 2 (TAIR:AT1G78680.1); Has 448 Blast hits to 444 proteins in 135 species: Archae - 0; Bacteria - 95; Metazoa - 194; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-371-MONOMEREC:3.4.19.9eggNOG:ENOG410XQKIeggNOG:KOG1559
EMBL:AC007260EMBL:AK317198EMBL:AY057702EMBL:BT024737
EMBL:CP002684EnsemblPlants:AT1G78660EnsemblPlants:AT1G78660.1EnsemblPlants:AT1G78660.2
EnsemblPlants:AT1G78660.3entrez:844202ExpressionAtlas:Q9SYL6Gene3D:3.40.50.880
GeneID:844202Genevisible:Q9SYL6GO:GO:0005615GO:GO:0005618
GO:GO:0005773GO:GO:0006508GO:GO:0006541GO:GO:0008242
GO:GO:0034722GO:GO:0046900gramene_plant_reactome:1119484gramene_plant_reactome:6876394
hmmpanther:PTHR11315HOGENOM:HOG000006721InParanoid:Q9SYL6InterPro:IPR011697
InterPro:IPR015527InterPro:IPR029062KEGG:00790+3.4.19.9KEGG:ath:AT1G78660
KO:K01307MEROPS:C26.002merops:C26.A02OMA:LNNSWRI
PANTHER:PTHR11315PaxDb:Q9SYL6Pfam:PF07722Pfam:Q9SYL6
Pfscan:PS51275PhylomeDB:Q9SYL6PIR:D96815PRIDE:Q9SYL6
PRO:PR:Q9SYL6PROSITE:PS51275ProteinModelPortal:Q9SYL6Proteomes:UP000006548
RefSeq:NP_177987.1RefSeq:NP_849900.1RefSeq:NP_974172.1SMR:Q9SYL6
STRING:3702.AT1G78660.1SUPFAM:SSF52317TAIR:AT1G78660tair10-symbols:ATGGH1
tair10-symbols:GGH1UniGene:At.20052UniProt:Q9SYL6
Coordinates (TAIR10) chr1:+:29585901..29588117
Molecular Weight (calculated) 39059.00 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.36
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MIDNNCLYKE ELNRNSYSGL AKEASESILL PSESGFDGSR SPVCSSPDPN LNYRPVIGIL SHPGDGASGR LTNDTSSTYI AASYVKFAEA GGARVIPLIY
101: NEPEEVLFQK LELVNGVIFT GGWAKKYDYF EIVKKIFTKA LERNDAGEHF PVYGICLGFE LMSIIISQNR DILERFDAED NASSLQFVDN VNNDGTLFQR
201: FPPELLKKLS TDCLVMQKHK YGITPANFQA NPALSSFFEI LTTCIDENSK TYVSTVKAKR YPITGFQWHP EKNAFEWGSS AIPHSEDAIQ VTQHAASYLV
301: SEARKSLNRP ESQKVLSNLI YNYKPTYCGY AGRGYDEVYI FTQPRSRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)