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AT5G54680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
iaa-leucine resistant3 (ILR3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G51070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20801eggNOG:ENOG410IQPKeggNOG:ENOG4111M4QEMBL:AB022214
EMBL:AF488629EMBL:AY054585EMBL:AY086197EMBL:BT002189
EMBL:CP002688EnsemblPlants:AT5G54680EnsemblPlants:AT5G54680.1entrez:835557
Gene3D:4.10.280.10GeneID:835557Genevisible:Q9FH37GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT5G54680.1hmmpanther:PTHR23042hmmpanther:PTHR23042:SF67HOGENOM:HOG000238732
InParanoid:Q9FH37IntAct:Q9FH37InterPro:IPR011598KEGG:ath:AT5G54680
ncoils:CoilOMA:PAGGFFWPaxDb:Q9FH37Pfam:PF00010
Pfam:Q9FH37Pfscan:PS50888PhylomeDB:Q9FH37PRO:PR:Q9FH37
PROSITE:PS50888ProteinModelPortal:Q9FH37Proteomes:UP000006548RefSeq:NP_200279.1
SMART:SM00353SMR:Q9FH37STRING:3702.AT5G54680.1SUPFAM:SSF47459
TAIR:AT5G54680tair10-symbols:bHLH105tair10-symbols:ILR3UniGene:At.49177
UniGene:At.9639UniProt:Q9FH37
Coordinates (TAIR10) chr5:+:22217270..22218993
Molecular Weight (calculated) 25489.30 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.68
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)