suba logo
AT5G53300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 10
Curator
Summary (TAIR10)
Encodes a ubiquitin conjugating enzyme.
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 10 (UBC10); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 9 (TAIR:AT4G27960.1); Has 10679 Blast hits to 10640 proteins in 402 species: Archae - 0; Bacteria - 4; Metazoa - 4642; Fungi - 2339; Plants - 1932; Viruses - 26; Other Eukaryotes - 1736 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G53300-MONOMERBioCyc:ARA:GQT-1310-MONOMERBioCyc:ARA:GQT-1311-MONOMERBioCyc:ARA:GQT-1312-MONOMER
BioGrid:20656EC:2.3.2.23eggNOG:COG5078eggNOG:KOG0417
EMBL:AB013388EMBL:AF324718EMBL:AF325005EMBL:AF326872
EMBL:AY039566EMBL:AY065059EMBL:AY086447EMBL:AY113937
EMBL:AY129488EMBL:CP002688EMBL:DQ027024EMBL:L00640
EMBL:Z14991EMBL:Z14993EnsemblPlants:AT5G53300EnsemblPlants:AT5G53300.1
EnsemblPlants:AT5G53300.2EnsemblPlants:AT5G53300.4entrez:835411ExpressionAtlas:P35133
Gene3D:3.10.110.10GeneID:835411Genevisible:P35133GO:GO:0004842
GO:GO:0005524GO:GO:0006511GO:GO:0031625hmmpanther:PTHR24068
HOGENOM:HOG000233455InParanoid:P35133InterPro:IPR000608InterPro:IPR016135
InterPro:IPR023313OMA:LYKTDRTPaxDb:P35133Pfam:P35133
Pfam:PF00179Pfscan:PS50127PhylomeDB:P35133PIR:S32672
PRIDE:P35133PRO:PR:P35133PROSITE:PS00183PROSITE:PS50127
ProteinModelPortal:P35133Proteomes:UP000006548Reactome:R-ATH-174184Reactome:R-ATH-179409
RefSeq:NP_001190528.1RefSeq:NP_568788.1RefSeq:NP_851181.1scanprosite:PS00183
SMR:P35133STRING:3702.AT5G53300.1SUPFAM:SSF54495TAIR:AT5G53300
tair10-symbols:UBC10UniGene:At.24357UniPathway:UPA00143UniProt:P35133
Coordinates (TAIR10) chr5:-:21632802..21633989
Molecular Weight (calculated) 16537.90 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.32
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SESPYAGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD KNKYESTARS WTQKYAMG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)