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AT1G14400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.665
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin carrier protein 1
Curator
Summary (TAIR10)
ubiquitin carrier protein
Computational
Description (TAIR10)
ubiquitin carrier protein 1 (UBC1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 10640 Blast hits to 10586 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4553; Fungi - 2331; Plants - 2017; Viruses - 26; Other Eukaryotes - 1711 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14400-MONOMERBioCyc:ARA:GQT-2296-MONOMERBioGrid:23242EC:2.3.2.23
eggNOG:COG5078eggNOG:KOG0419EMBL:AC012188EMBL:AF332451
EMBL:AK226391EMBL:AY070074EMBL:AY085783EMBL:AY091330
EMBL:CP002684EMBL:DQ027016EMBL:L19351EMBL:M62721
EMBL:Z27262EnsemblPlants:AT1G14400EnsemblPlants:AT1G14400.1EnsemblPlants:AT1G14400.2
entrez:838002EvolutionaryTrace:P25865Gene3D:3.10.110.10GeneID:838002
Genevisible:P25865GO:GO:0000209GO:GO:0004842GO:GO:0005524
GO:GO:0005737GO:GO:0006281GO:GO:0006511GO:GO:0010228
GO:GO:0031625GO:GO:0033523GO:GO:0043161GO:GO:0061630
Gramene:AT1G14400.1Gramene:AT1G14400.2hmmpanther:PTHR24067hmmpanther:PTHR24067:SF120
HOGENOM:HOG000233454InParanoid:P25865IntAct:P25865InterPro:IPR000608
InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT1G14400KO:K10573
OMA:PEEHEKMPaxDb:P25865PDB:2AAKPDBsum:2AAK
Pfam:P25865Pfam:PF00179Pfscan:PS50127PhylomeDB:P25865
PIR:S43781PRIDE:P25865PRO:PR:P25865PROSITE:PS00183
PROSITE:PS50127ProteinModelPortal:P25865Proteomes:UP000006548RefSeq:NP_563951.1
RefSeq:NP_973825.1scanprosite:PS00183SMR:P25865STRING:3702.AT1G14400.1
SUPFAM:SSF54495TAIR:AT1G14400tair10-symbols:ATUBC1tair10-symbols:UBC1
UniGene:At.331UniPathway:UPA00143UniProt:P25865
Coordinates (TAIR10) chr1:-:4927294..4928136
Molecular Weight (calculated) 17282.30 Da
IEP (calculated) 5.18
GRAVY (calculated) -0.59
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)