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AT4G08330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZNEeggNOG:ENOG41128JSEMBL:AK117649EMBL:AL109819
EMBL:AL161511EMBL:BT004992EMBL:CP002687EnsemblPlants:AT4G08330
EnsemblPlants:AT4G08330.1entrez:826387ExpressionAtlas:Q9STN5GeneID:826387
Genevisible:Q9STN5GO:GO:0005886GO:GO:0009507hmmpanther:PTHR33674
hmmpanther:PTHR33674:SF3HOGENOM:HOG000238435InParanoid:Q9STN5iPTMnet:Q9STN5
OMA:YDIRIRSPaxDb:Q9STN5Pfam:Q9STN5PhylomeDB:Q9STN5
PIR:T14187PRIDE:Q9STN5PRO:PR:Q9STN5ProteinModelPortal:Q9STN5
Proteomes:UP000006548RefSeq:NP_192573.1TAIR:AT4G08330UniGene:At.27988
UniGene:At.71009UniProt:Q9STN5
Coordinates (TAIR10) chr4:-:5255384..5256525
Molecular Weight (calculated) 18207.30 Da
IEP (calculated) 9.62
GRAVY (calculated) -0.49
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MERSASVGVN DGRFGGNQFY SPSFSSSSSS SSMRHVNYSC GSCGYELNLS STNRITSTIG SKYGKSMKSG IISFFNIDEG RFSQVDEFQC MPHFSRYSWG
101: LFRHRTKLLC RKCNNYIGNA SQEKAPEYAL VTQNSDPTSP RIGSVTKYDI RIRSLQPSSA VALL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)