suba logo
AT1G02040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : C2H2-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G17180.1); Has 5502 Blast hits to 3522 proteins in 286 species: Archae - 2; Bacteria - 120; Metazoa - 2284; Fungi - 460; Plants - 1034; Viruses - 242; Other Eukaryotes - 1360 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AB493422EMBL:BT030040
EMBL:CP002684EnsemblPlants:AT1G02040EnsemblPlants:AT1G02040.1entrez:839284
GeneID:839284GO:GO:0003700GO:GO:0006355GO:GO:0046872
Gramene:AT1G02040.1hmmpanther:PTHR26374HOGENOM:HOG000131787InterPro:IPR007087
InterPro:IPR015880KEGG:ath:AT1G02040ncoils:CoilOMA:PWKRERS
Pfam:PF13912Pfscan:PS50157PhylomeDB:Q3EDL3PROSITE:PS00028
PROSITE:PS50157Proteomes:UP000006548RefSeq:NP_171706.1scanprosite:PS00028
SMART:SM00355SMR:Q3EDL3STRING:3702.AT1G02040.1SUPFAM:SSF57667
TAIR:AT1G02040UniGene:At.65872UniProt:Q3EDL3
Coordinates (TAIR10) chr1:-:358104..359078
Molecular Weight (calculated) 36604.20 Da
IEP (calculated) 6.75
GRAVY (calculated) -1.09
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MHVTRNVGKS QKLHHVSLKQ VLSYLEPHEQ EDTKPVTSTK NKGFLLFNSH QNTLNTHMHG AMNSPCIDFV MFSRGQHDED NMSRRPPWKR ERSMSTQHHH
101: LNLSPNEDEE LANCLVLLSN SGDAHGGDQH KQHGHGKGKT VKKQKTAQVF QCKACKKVFT SHQALGGHRA SHKKVKGCFA SQDKEEEEEE EYKEDDDDND
201: EDEDEEEDEE DKSTAHIARK RSNAHECTIC HRVFSSGQAL GGHKRCHWLT PSNYLRMTSL HDHHHSVGRP QPLDQPSLDL NLACQEYSVD PTAMSVGMIE
301: RDGGGNNHNA TSSSWLKLAS GDWS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)