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AT4G25400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G51780.1); Has 180 Blast hits to 180 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1FAeggNOG:ENOG41114KFEMBL:AB493699EnsemblPlants:AT4G25400
EnsemblPlants:AT4G25400.1entrez:828643Gene3D:4.10.280.10GeneID:828643
GO:GO:0003677GO:GO:0006355Gramene:AT4G25400.1hmmpanther:PTHR13935
hmmpanther:PTHR13935:SF54InterPro:IPR011598InterPro:IPR015660KEGG:ath:AT4G25400
OMA:NEQEWNEPANTHER:PTHR13935PaxDb:C0SVJ6Pfam:PF00010
Pfam:Q9STJ7Pfscan:PS50888PhylomeDB:C0SVJ6PRIDE:C0SVJ6
PROSITE:PS50888ProteinModelPortal:C0SVJ6RefSeq:NP_194270.1SMART:SM00353
SMR:C0SVJ6STRING:3702.AT4G25400.1SUPFAM:SSF47459TAIR:AT4G25400
UniGene:At.32261UniProt:C0SVJ6UniProt:Q9STJ7
Coordinates (TAIR10) chr4:+:12981295..12982335
Molecular Weight (calculated) 18695.70 Da
IEP (calculated) 7.57
GRAVY (calculated) -0.15
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKLVHKEIE KRRRQEMASL YASLRSLLPL EFIQGKRSTS DQVKGAVNYI DYLQRNIKDI NSKRDDLVLL SGRSFRSSNE QEWNEISNHV VIRPCLVGIE
101: IVLSILQTPF SSVLQVLREH GLYVLGYICS SVNDRLIHTL QAEVNDLALI DLADLKDTLT LMK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)