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AT2G05900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SET domain protein 11
Curator
Summary (TAIR10)
Predicted to encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.
Computational
Description (TAIR10)
SET domain protein 11 (SDG11); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 3 (TAIR:AT1G73100.1); Has 2906 Blast hits to 2667 proteins in 280 species: Archae - 0; Bacteria - 89; Metazoa - 1281; Fungi - 322; Plants - 960; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G05900-MONOMEReggNOG:COG2940eggNOG:KOG1082EMBL:AC005970
EMBL:CP002685EnsemblPlants:AT2G05900EnsemblPlants:AT2G05900.1entrez:815142
Gene3D:2.30.280.10GeneID:815142Genevisible:Q3EC60GO:GO:0000775
GO:GO:0005634GO:GO:0016568GO:GO:0046872Gramene:AT2G05900.1
hmmpanther:PTHR22884hmmpanther:PTHR22884:SF300HOGENOM:HOG000154456InParanoid:Q3EC60
InterPro:IPR001214InterPro:IPR003105InterPro:IPR015947KEGG:ath:AT2G05900
OMA:CACGRRSPaxDb:Q3EC60Pfam:PF00856Pfam:PF02182
Pfam:Q3EC60Pfscan:PS50280Pfscan:PS51015PhylomeDB:Q3EC60
PIR:G84472PRIDE:Q3EC60PRO:PR:Q3EC60PROSITE:PS50280
PROSITE:PS51015ProteinModelPortal:Q3EC60Proteomes:UP000006548RefSeq:NP_178647.1
SMART:SM00317SMART:SM00466SMR:Q3EC60STRING:3702.AT2G05900.1
SUPFAM:SSF82199SUPFAM:SSF88697TAIR:AT2G05900tair10-symbols:SDG11
tair10-symbols:SUVH10UniGene:At.41135UniProt:Q3EC60UniProt:V9H0G5
Coordinates (TAIR10) chr2:+:2256970..2257908
Molecular Weight (calculated) 35025.30 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.35
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLVGLHSGT IDMEFIGVED HGDEEGKQIA VSVISSGKNA DKTEDPDSLI FTGFGGTDMY HGQPCNQKLE RLNIPLEAAF RKKSIVRVVR CMKDEKRTNG
101: NIYIYDGTYM ITNRWEEEGQ NGFIVFKFKL VREPDQKPAF GIWKSIQNWR NGLSIRPGLI LEDLSNGAEN LKVCLVNEVD KENGPALFRY VTSLIHEVIN
201: NIPSMVDRCA CGRRSCGSKH VFREKLSVSS SLVISAKKSG NVARFMNHSC SPNVFWQSIA REQNGLWCLY IGFFAMKHIP PLTELRYDYG KSRGGGKKMC
301: LCRTKKCCGS FG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)