AT2G05900.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : SET domain protein 11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Predicted to encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
SET domain protein 11 (SDG11); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 3 (TAIR:AT1G73100.1); Has 2906 Blast hits to 2667 proteins in 280 species: Archae - 0; Bacteria - 89; Metazoa - 1281; Fungi - 322; Plants - 960; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:2256970..2257908 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 35025.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 312 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGLVGLHSGT IDMEFIGVED HGDEEGKQIA VSVISSGKNA DKTEDPDSLI FTGFGGTDMY HGQPCNQKLE RLNIPLEAAF RKKSIVRVVR CMKDEKRTNG 101: NIYIYDGTYM ITNRWEEEGQ NGFIVFKFKL VREPDQKPAF GIWKSIQNWR NGLSIRPGLI LEDLSNGAEN LKVCLVNEVD KENGPALFRY VTSLIHEVIN 201: NIPSMVDRCA CGRRSCGSKH VFREKLSVSS SLVISAKKSG NVARFMNHSC SPNVFWQSIA REQNGLWCLY IGFFAMKHIP PLTELRYDYG KSRGGGKKMC 301: LCRTKKCCGS FG |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)