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AT3G56520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 95 (TAIR:AT5G41090.1); Has 1738 Blast hits to 1735 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1738; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSYJeggNOG:ENOG41108CTEMBL:AL163972EMBL:CP002686
EMBL:DQ056627EnsemblPlants:AT3G56520EnsemblPlants:AT3G56520.1entrez:824819
GeneID:824819GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT3G56520.1hmmpanther:PTHR31719hmmpanther:PTHR31719:SF6
HOGENOM:HOG000152549InterPro:IPR003441KEGG:ath:AT3G56520OMA:EESDNIC
Pfam:PF02365Pfscan:PS51005PhylomeDB:Q9LXY8PIR:T49053
PROSITE:PS51005Proteomes:UP000006548RefSeq:NP_191211.1SMR:Q9LXY8
SUPFAM:SSF101941TAIR:AT3G56520UniGene:At.53950UniProt:Q9LXY8
Coordinates (TAIR10) chr3:-:20947107..20947731
Molecular Weight (calculated) 20379.70 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.80
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPTHRALPV GFRFRSTNCE ISNYFLKKKA LGQPMKARTI PEECHDIFSR HPHDLPGYPS EEHWYYFCRK RDNQVTSNSH NLWTPIGEET NVLDPKNNDA
101: LVGIKRRFTL IAQEEEESDN ICLSDDEEAL KYNWFMDEIS LPQTVANTDW VLCHIFGKKT KPETTDLSTI DSESE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)