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AT5G42630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.
Computational
Description (TAIR10)
ABERRANT TESTA SHAPE (ATS); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G16560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19520eggNOG:ENOG410IXDBeggNOG:ENOG410YIVSEMBL:AB013391
EMBL:AY048691EMBL:BT026053EMBL:CP002688EnsemblPlants:AT5G42630
EnsemblPlants:AT5G42630.1entrez:834270Gene3D:1.10.10.60GeneID:834270
Genevisible:Q9FJV5GO:GO:0003700GO:GO:0005618GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0030154GO:GO:0044212
GO:GO:0048481GO:GO:0080060hmmpanther:PTHR31496hmmpanther:PTHR31496:SF7
HOGENOM:HOG000241649InParanoid:Q9FJV5InterPro:IPR001005InterPro:IPR006447
InterPro:IPR009057KEGG:ath:AT5G42630OMA:GFEMADLPaxDb:Q9FJV5
Pfam:PF00249Pfam:Q9FJV5PhylomeDB:Q9FJV5PRIDE:Q9FJV5
PRO:PR:Q9FJV5ProteinModelPortal:Q9FJV5Proteomes:UP000006548RefSeq:NP_001119363.1
RefSeq:NP_199077.1SMR:Q9FJV5STRING:3702.AT5G42630.1SUPFAM:SSF46689
TAIR:AT5G42630tair10-symbols:ATStair10-symbols:KAN4TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.26412UniProt:Q9FJV5
Coordinates (TAIR10) chr5:-:17073997..17075747
Molecular Weight (calculated) 30963.00 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.87
Length 276 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRA SWSSTKEVSR SISTQAYSHL GTTHHTKDNE EKEDTNIHLN LDFTLGRPSW GMEYAEPSSD LTLLKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)