AT3G54730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.955 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: ovate family protein 9 (TAIR:AT4G04030.1); Has 17 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 8; Viruses - 3; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20259259..20260422 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44159.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.09 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.50 | ||||||||||||||||||||||||||||||||
| Length | 387 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALVMLARAP APPLLLPSPN PPPCALPQDL TSLVSPSEPP DPPDPPDYLV GASNSFLSIL LLRSSDLGSD LVQALSPLDL GFALRSITAV CSSWYQVFPL 101: ACLELWFSIP HLSHPLVTLS KGFVSLKGSN FFEFFTFFWN MPSFILQFPH HEDVMISTSF RLVLPQYEAV MILLKLKLFL PHYEDVLFSI GLRIQLLLPQ 201: YEVGLILYKL RLLLPHYEDV IQKLWLRAIH VIVSLVWFLE ISRRIKEKTY DVLTRNDLGS WTPDLFIEKW WFSQPHTSPK LRFFSHLVGS RSWCFVAYAI 301: VAVFHDAFYP LEDVASPDSR SPSVLSYFRK LISCFSTIGV SNFSCLTVMY VFIFFFRAFR MPFVAVVSLA FVASLMYLLN HFSIVGE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)