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AT3G54730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.955
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: ovate family protein 9 (TAIR:AT4G04030.1); Has 17 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 8; Viruses - 3; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSBBeggNOG:ENOG4111439EMBL:AL138650EMBL:CP002686
EMBL:DQ446766EnsemblPlants:AT3G54730EnsemblPlants:AT3G54730.1EnsemblPlants:AT3G54730.2
EnsemblPlants:AT4G04030.1entrez:824638entrez:825715ExpressionAtlas:P0DKG2
GeneID:824638GeneID:825715Genevisible:P0DKG2GO:GO:0016021
KEGG:ath:AT3G54730KEGG:ath:AT4G04030PaxDb:P0DKG2Pfam:P0DKG2
PIR:T47632PRO:PR:P0DKG2Proteomes:UP000006548RefSeq:NP_001154676.1
RefSeq:NP_191033.1RefSeq:NP_192312.4TAIR:AT3G54730TMHMM:TMhelix
UniGene:At.52835UniGene:At.53933UniGene:At.54128UniProt:P0DKG2
Coordinates (TAIR10) chr3:+:20259259..20260422
Molecular Weight (calculated) 44159.30 Da
IEP (calculated) 7.09
GRAVY (calculated) 0.50
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MALVMLARAP APPLLLPSPN PPPCALPQDL TSLVSPSEPP DPPDPPDYLV GASNSFLSIL LLRSSDLGSD LVQALSPLDL GFALRSITAV CSSWYQVFPL
101: ACLELWFSIP HLSHPLVTLS KGFVSLKGSN FFEFFTFFWN MPSFILQFPH HEDVMISTSF RLVLPQYEAV MILLKLKLFL PHYEDVLFSI GLRIQLLLPQ
201: YEVGLILYKL RLLLPHYEDV IQKLWLRAIH VIVSLVWFLE ISRRIKEKTY DVLTRNDLGS WTPDLFIEKW WFSQPHTSPK LRFFSHLVGS RSWCFVAYAI
301: VAVFHDAFYP LEDVASPDSR SPSVLSYFRK LISCFSTIGV SNFSCLTVMY VFIFFFRAFR MPFVAVVSLA FVASLMYLLN HFSIVGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)