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AT2G36340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA-binding storekeeper protein-related transcriptional regulator
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding storekeeper protein-related transcriptional regulator; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT2G25650.1); Has 3752 Blast hits to 2505 proteins in 289 species: Archae - 18; Bacteria - 210; Metazoa - 937; Fungi - 323; Plants - 271; Viruses - 164; Other Eukaryotes - 1829 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT7WeggNOG:ENOG411083SEMBL:AB493578EMBL:AC006921
EMBL:AY773863EMBL:CP002685EnsemblPlants:AT2G36340EnsemblPlants:AT2G36340.1
entrez:818207GeneID:818207GO:GO:0003677GO:GO:0006355
Gramene:AT2G36340.1hmmpanther:PTHR31662hmmpanther:PTHR31662:SF1InterPro:IPR007592
KEGG:ath:AT2G36340OMA:DVPCEEQPfam:PF04504PhylomeDB:Q9SJM4
PIR:E84779Proteomes:UP000006548RefSeq:NP_181175.1STRING:3702.AT2G36340.1
TAIR:AT2G36340UniGene:At.49371UniProt:Q9SJM4
Coordinates (TAIR10) chr2:+:15235858..15237489
Molecular Weight (calculated) 47341.60 Da
IEP (calculated) 4.11
GRAVY (calculated) -0.89
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGTKRVADS IDTNSDDTLT RNREVEVEAM LSRRKQLRTT TTRTTTTRTT PLSLSSSASK MNWSKNDELV ILGGIVDYEN ETKLSYRSDW DALYRYIKDC
101: VEAKFSKIQL INKVKNMKRK FTYNQGRSNH GEQLSFTNTD DDEIFKLSLI IWDKNESEYV SNENIDQAKD VPSGEPETND VPCEEQDDRD VPCEEQERAN
201: IEIDNGVREK LDQAKDVPCV EQESEDVPCV EQERVSIEID NGEKEKLDQT MDCEEQENTD VLCEEKGDKD VPCEEQENKD VPCEEQERVS IEIDNGEEEM
301: SSEEDGVDEV GVMEDTLDSG ISFQGLGKNG VKDKSEEDDV VELGVLQEIF KEDTFFQSLG RYQQKLLLQN LENVGVERRK ELINEWKALF VDEQRLCVKK
401: LTFAAKLANL GVSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)