AT2G24500.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Zinc finger protein 622 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a C2H2 zinc finger protein FZF. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
FZF; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: Zinc finger protein 622 (TAIR:AT4G31420.1); Has 877 Blast hits to 864 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 359; Fungi - 284; Plants - 90; Viruses - 2; Other Eukaryotes - 142 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:10401259..10402805 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 44989.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 395 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSGLACNSCN KDFEDDAEQK FHYKSEWHRY NLKRKIAGVP GVTEALFEAR QAAIAQEKVK AVEAPMLYSC GICNKGYRSS KAHEQHLKSK SHVLKASTST 101: GEEDKAIIKQ LPPRRVEKNN TAQLKGSIEE EESEDEWIEV DSDEDLDAEM NEDGEEEDMD EDGIEFELDP ACCLMCDKKH KTIEKCMVHM HKFHGFFIPD 201: IEYLKDPKGF LTYLGLKVKR DFVCLYCNEL CHPFSSLEAV RKHMDAKGHC KVHYGDGGDE EDAELEEFYD YSSSYVNGDE NQMVVSGESV NTVELFGGSE 301: LVITKRTDNK VTSRTLGSRE FMRYYKQKPA PSSQKHIVNS LTSRYKMMGL ATVQSKEAIV RMKVMREMNK RGAKSSVRLG MKSNVIRNLP NNVTY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)