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AT3G42860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc knuckle (CCHC-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, GRF-type (InterPro:IPR010666), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 (TAIR:AT4G36020.1); Has 49068 Blast hits to 18471 proteins in 427 species: Archae - 0; Bacteria - 1; Metazoa - 1577; Fungi - 900; Plants - 1276; Viruses - 44658; Other Eukaryotes - 656 (source: NCBI BLink).
Protein Annotations
EC:5.99.1.2eggNOG:COG5082eggNOG:KOG4400EMBL:AL138654
EMBL:AY065276EMBL:AY133785EMBL:CP002686EnsemblPlants:AT3G42860
EnsemblPlants:AT3G42860.1entrez:823332Gene3D:4.10.60.10GeneID:823332
GO:GO:0003677GO:GO:0003917GO:GO:0006265GO:GO:0008270
Gramene:AT3G42860.1hmmpanther:PTHR11390hmmpanther:PTHR11390:SF25HOGENOM:HOG000006218
InterPro:IPR000380InterPro:IPR001878InterPro:IPR010666KEGG:ath:AT3G42860
OMA:KPGHWARPANTHER:PTHR11390Pfam:PF00098Pfam:PF06839
Pfscan:PS50158PhylomeDB:Q9M1L9PIR:T47344PROSITE:PS50158
Proteomes:UP000006548RefSeq:NP_189872.1SMART:SM00343SMR:Q9M1L9
STRING:3702.AT3G42860.1SUPFAM:SSF57756TAIR:AT3G42860UniGene:At.28534
UniProt:Q9M1L9
Coordinates (TAIR10) chr3:-:14946458..14948097
Molecular Weight (calculated) 39914.90 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.84
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKITIPVES LDEEDDFLLQ LAAIEAEAAA KRPRVSSIPE GPYMAALKGS KSDQWQQSPL NPASKSRSVA VTTGGFQRSD GGGGVAGEQD FPEKSCPCGV
101: GICLILTSNT PKNPGRKFYK CPNREENGGC GFFQWCDAVQ SSGTSTTTSN SYGNGNDTKF PDHQCPCGAG LCRVLTAKTG ENVGRQFYRC PVFEGSCGFF
201: KWCNDNVVSS PTSYSVTKNS NFGDSDTRGY QNAKTGTPCY KCGKEGHWAR DCTVQSDTGP VKSTSAAGDC FKCGKPGHWS RDCTAQSGNP KYEPGQMKSS
301: SSSGECYKCG KQGHWSRDCT GQSSNQQFQS GQAKSTSSTG DCYKCGKAGH WSRDCTSPAQ TTNTPGKRQR QY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)