AT1G34160.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.996 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 36841 Blast hits to 13999 proteins in 256 species: Archae - 0; Bacteria - 8; Metazoa - 78; Fungi - 94; Plants - 36058; Viruses - 0; Other Eukaryotes - 603 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:+:12441393..12443225 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 65456.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 581 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MARVYMETMI QKCVSFSQIK QLQSHFLTAG HFQSSFLRSR LLERCAISPF GDLSFAVQIF RYIPKPLTND WNAIIRGFAG SSHPSLAFSW YRSMLQQSSS 101: SSAICRVDAL TCSFTLKACA RALCSSAMDQ LHCQINRRGL SADSLLCTTL LDAYSKNGDL ISAYKLFDEM PVRDVASWNA LIAGLVSGNR ASEAMELYKR 201: METEGIRRSE VTVVAALGAC SHLGDVKEGE NIFHGYSNDN VIVSNAAIDM YSKCGFVDKA YQVFEQFTGK KSVVTWNTMI TGFAVHGEAH RALEIFDKLE 301: DNGIKPDDVS YLAALTACRH AGLVEYGLSV FNNMACKGVE RNMKHYGCVV DLLSRAGRLR EAHDIICSMS MIPDPVLWQS LLGASEIYSD VEMAEIASRE 401: IKEMGVNNDG DFVLLSNVYA AQGRWKDVGR VRDDMESKQV KKIPGLSYIE AKGTIHEFYN SDKSHEQWRE IYEKIDEIRF KIREDGYVAQ TGLVLHDIGE 501: EEKENALCYH SEKLAVAYGL MMMDGADEES PVRVINNLRI CGDCHVVFKH ISKIYKREII VRDRVRFHRF KDGSCSCRDF W |
||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)