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AT5G40840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rad21/Rec8-like family protein
Curator
Summary (TAIR10)
Cohesion family protein SYN2 (SYN2).
Computational
Description (TAIR10)
SYN2; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: sister chromatid cohesion 1 protein 4 (TAIR:AT5G16270.1); Has 1217 Blast hits to 955 proteins in 245 species: Archae - 0; Bacteria - 80; Metazoa - 480; Fungi - 224; Plants - 240; Viruses - 3; Other Eukaryotes - 190 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G40840EnsemblPlants:AT5G40840.1entrez:834084hmmpanther:PTHR12585
hmmpanther:PTHR12585:SF31Pfam:PF04824Pfam:PF04825tair10-symbols:AtRAD21.1
tair10-symbols:SYN2
Coordinates (TAIR10) chr5:-:16359611..16363722
Molecular Weight (calculated) 91336.00 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.70
Length 809 amino acids
Sequence (TAIR10)
(BLAST)
001: MFYSHCLVSR KGPLGAIWVA AYFFKKLKKS QVKATHIPSS VDQILQKELD ALTYRVLAYL LLGVVRIYSK KVDFLFDDCN KALIGVKEFV AKERNREKTG
101: VSLPASIECF SIALPERFEL DAFDLGVLED FHGGNVKPHE DITLKDGSQE TERMDMYSME RFDMEEDLLF TFHETFSTNH NENKHESFAH DMELDAENVR
201: DTTEEASVRV VEAEPLDSNE PSRDHQNASR HREDPESDDI LLEPQMSEDI RIAQEEDTVR ETICTIVQRL VDSHESSGDN LHRDGHTENL ESEKTSKKTS
301: CEEMQHDRSL PSECGIPEAI HGIEDQPSGA TRINGEKEIP EMSTLEKPEP VSVTGSRDLQ EGVEKCRDHN EAEMADFELF HGSHKEQSET SEVNLHGSEK
401: GFLSDMTVSK DPSSEFNATD TPVTVTPKTP SRLKISEGGT SPQFSIIPTP AAKESSRVSR KRKCLIDDEV IIPNKVMKEM IEDSSKLLAK RRNVPHTDCP
501: ERRTKRFANP FRSFLEPLIQ YGSSDLQSLF CQPIKLKNWA TTGTPKDTKI ARHKEKSSLD TVRSPGVILS SDQTENTQEI METPQAAALA GLKVTAGNSN
601: VVSVEMGASS TTSGTAHQTE NAAETPVKPS VIAPETPVRT SEQTVIAPET PVVSEQVEIA PETPVRESMS KRFFKDPGTC YKKSRPASPF TSFEEHPSVY
701: YVENRDLDTI LMNDEVNADE RQDLQQETWS SRTRNVAKFL EKTFLEQRER EEEEKVSLLQ LCRGRTQKES ARLFYETLVL KTKGYVEVKQ NHPYSDVFLM
801: RVSRPQKAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)