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AT1G24250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.969
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Paired amphipathic helix (PAH2) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G23810.1); Has 951 Blast hits to 563 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 221; Plants - 322; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5602eggNOG:KOG4204EMBL:AC002396EMBL:CP002684
EnsemblPlants:AT1G24250EnsemblPlants:AT1G24250.1entrez:839039Gene3D:1.20.1160.11
GeneID:839039GO:GO:0006355Gramene:AT1G24250.1hmmpanther:PTHR12346
HOGENOM:HOG000057296InterPro:IPR003822KEGG:ath:AT1G24250Pfam:PF02671
Pfscan:PS51477PhylomeDB:O48692PIR:T00655PROSITE:PS51477
Proteomes:UP000006548RefSeq:NP_173835.1SMR:O48692STRING:3702.AT1G24250.1
SUPFAM:SSF47762TAIR:AT1G24250UniGene:At.51750UniProt:O48692
Coordinates (TAIR10) chr1:-:8588442..8589546
Molecular Weight (calculated) 27809.80 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.04
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGSLSPAS SLEDVKAYVN AVEVALQEME PARFGMFVRL FRGFTAPRIG MPTFSARMQD LLKDHPSLCL GLNVLLPPEY QLTIPPEASE EFHKVVGRSV
101: PVPPKVVGRS LPRPEPTIDD ATSYLIAVKE AFHDEPAKYG EMLKLLKDFK ARRVDAACVI ARVEELMKDH LNLLFGFCVF LSATTSFTTK LKARFQGDGS
201: QVVDSVLQIM RMYGEGNKSK HDAYQEVVAL VQGHDDLVME LSQILTDPPT GV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)