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AT5G59570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G46640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW0UeggNOG:ENOG410XXJ3EMBL:AB025604EMBL:AB206577
EMBL:AK117348EMBL:AY088089EMBL:BT026065EMBL:CP002688
EnsemblPlants:AT5G59570EnsemblPlants:AT5G59570.1entrez:836076Gene3D:1.10.10.60
GeneID:836076Genevisible:Q9LTH4GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0007623
GO:GO:0009909Gramene:AT5G59570.1hmmpanther:PTHR31442hmmpanther:PTHR31442:SF6
HOGENOM:HOG000238691InParanoid:Q9LTH4InterPro:IPR001005InterPro:IPR006447
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT5G59570OMA:RIPEWEI
PaxDb:Q9LTH4Pfam:PF00249Pfam:Q9LTH4Pfscan:PS51294
PhylomeDB:Q9LTH4PRIDE:Q9LTH4PRO:PR:Q9LTH4PROSITE:PS51294
ProteinModelPortal:Q9LTH4Proteomes:UP000006548RefSeq:NP_200765.1SMR:Q9LTH4
STRING:3702.AT5G59570.1SUPFAM:SSF46689TAIR:AT5G59570TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.29219UniProt:Q9LTH4
Coordinates (TAIR10) chr5:+:24004047..24004943
Molecular Weight (calculated) 32368.80 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.64
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKEVMVSDY GDDDGEDAGG GDEYRIPEWE IGLPNGDDLT PLSQYLVPSI LALAFSMIPE RSRTIHDVNR ASQITLSSLR SSTNASSVME EVVDRVESSV
101: PGSDPKKQKK SDGGEAAAVE DSTAEEGDSG PEDASGKTSK RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRIQ
201: GLTTEEDPYS SSDQLFSSTP VPPQSFQDGG GSNGKLGVPV PVPSMVPIPG YGNQMGMQGY YQQYSNHGNE SNQYMMQQNK FGTMVTYPSV GGGDVNDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)