AT1G60700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SMAD/FHA domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SMAD/FHA domain-containing protein ; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT3G54350.3); Has 241 Blast hits to 241 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 2; Plants - 57; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:22352036..22354372 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59131.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||
| Length | 525 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEGLRVSEH LFVNKDLFGG DVKISGEEDT SESSNVKRKV ESLFSVMRKR TCRHKSVDDD MFPDLDNNAD IGDGDEDIRN CLRPESDFWF KNLMDNPYDP 101: LDEGSIVDAS GSDTDISESS EFDVISEHVP EDNDLITGSK SLSIWSSEDD GTLVSKWSSE THNEKNDVRS KEDSGVPSNS DIFKNDGDKS SAIEVRCGDE 201: INMQGSMEIM CINDDHRLWN KDDEPIPISI VPPNGCESLL LETCSRHQID RCINEYNVHE DNIGLEISPI PLTKTLERPR RPWSVCCSIA ALRNLPLMED 301: SSGACTSLDE QLYANATTSE DRDAELSQPP STLYQEEVDG EEEIDIDAMI RKLNLVPDDS DSCFNREEWN MSKHPRHALI GLEQCTRTSM QRAIMFHGAI 401: AVLHCPDSKH FVRKREVIIG RSSGGLNVDI DLGKYNYGSK ISRRQALVKL ENYGSFSLKN LGKQHILVNG GKLDRGQIVT LTSCSSINIR GITFVFKINK 501: EAVGQFLKNN TRRKSEDDNK FRWCE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)