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AT5G48385.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FRIGIDA-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT4G14900.1); Has 1269 Blast hits to 1187 proteins in 101 species: Archae - 0; Bacteria - 22; Metazoa - 72; Fungi - 9; Plants - 1133; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Protein Annotations
BioGrid:20139eggNOG:ENOG410IHEDeggNOG:ENOG4110RQDEMBL:AB020745
EMBL:AK176205EMBL:AK226356EMBL:AK230331EMBL:AY136326
EMBL:BT000104EMBL:CP002688EnsemblPlants:AT5G48385EnsemblPlants:AT5G48385.1
entrez:834893GeneID:834893GO:GO:0009908GO:GO:0030154
Gramene:AT5G48385.1hmmpanther:PTHR31791hmmpanther:PTHR31791:SF12HOGENOM:HOG000070532
IntAct:Q67ZB3InterPro:IPR012474KEGG:ath:AT5G48385ncoils:Coil
OMA:INNGRHIPaxDb:Q67ZB3Pfam:PF07899Pfam:Q67ZB3
PhylomeDB:Q67ZB3PRIDE:Q67ZB3PRO:PR:Q67ZB3ProteinModelPortal:Q67ZB3
Proteomes:UP000006548RefSeq:NP_850923.1STRING:3702.AT5G48385.1TAIR:AT5G48385
UniGene:At.21853UniGene:At.22830UniProt:Q67ZB3
Coordinates (TAIR10) chr5:+:19609471..19611712
Molecular Weight (calculated) 62618.90 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.54
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)