AT1G19880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 17859 Blast hits to 6314 proteins in 497 species: Archae - 78; Bacteria - 2347; Metazoa - 6181; Fungi - 1100; Plants - 2708; Viruses - 16; Other Eukaryotes - 5429 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6900648..6903818 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57844.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.71 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||
| Length | 538 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEAMNSSEK KDESSEEKGG ELLFCGATAW DIIGKRKGAM EGNLVSPTRL RPLVGVNIRF VATGCASFHC VALDVEGRCY TWGRNEKGQL GHGDMIQRDR 101: PTVVSGLSKH KIVKAAAGRN HTVVVSDDGQ SLGFGWNKYG QLGLGSAKNG FVSVEVESTP LPCVVSDEVT NVACGADFTV WLSSTEGASI LTAGLPQYGQ 201: LGHGTDNEFN MKDSSVRLAY EAQPRPKAIA SLAGETIVKV ACGTNHTVAV DKNGYVYTWG FGGYGRLGHR EQKDEWAPRR IDVFQRNNVL PPNAILSAGS 301: ANSACTAGGG QLYMWGKIKN NGDDWMYPKP MMDLSGWNLR WMDSGSMHHF VGADSSCISW GHAQYGELGY GPNGQKSSAA PKKVDMLEGM HVMGVACGFC 401: HSMVIVDRTD IADRLEQLEV YDGKGSLEES VEEVKEETLA PKQQAVTKRG ASKKRKASKA SSDSEQDSDE DNSDKEKEVQ GSDADSDYSE DGEEANGKKQ 501: SARGRGRGRG ARGRGGRTSN GKAPPVKTGG RRGRPRKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)