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AT2G31400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : genomes uncoupled 1
Curator
Summary (TAIR10)
Encodes a a chloroplast-localized pentatricopeptide-repeat protein involved in regulation of nuclear gene expression.
Computational
Description (TAIR10)
genomes uncoupled 1 (GUN1); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 2 (TAIR:AT1G74850.1); Has 66090 Blast hits to 15992 proteins in 322 species: Archae - 5; Bacteria - 98; Metazoa - 1298; Fungi - 977; Plants - 60012; Viruses - 1; Other Eukaryotes - 3699 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007169EMBL:BX819946
EMBL:CP002685EnsemblPlants:AT2G31400EnsemblPlants:AT2G31400.1entrez:817698
Gene3D:1.25.40.10GeneID:817698Genevisible:Q9SIC9GO:GO:0003677
GO:GO:0009507GO:GO:0010019GO:GO:0031930Gramene:AT2G31400.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF366HOGENOM:HOG000030408InParanoid:Q9SIC9
InterPro:IPR002625InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT2G31400
OMA:LLMGQREPaxDb:Q9SIC9Pfam:PF01535Pfam:PF01713
Pfam:PF13041Pfam:PF13812Pfam:Q9SIC9Pfscan:PS50828
Pfscan:PS51375PhylomeDB:Q9SIC9PIR:C84720PRIDE:Q9SIC9
PRO:PR:Q9SIC9PROSITE:PS50828PROSITE:PS51375ProteinModelPortal:Q9SIC9
Proteomes:UP000006548RefSeq:NP_180698.1SMART:SM00463SMR:Q9SIC9
STRING:3702.AT2G31400.1SUPFAM:0053808SUPFAM:SSF160443TAIR:AT2G31400
tair10-symbols:GUN1TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.20815
UniProt:Q9SIC9
Coordinates (TAIR10) chr2:-:13387201..13390550
Molecular Weight (calculated) 101630.00 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.28
Length 918 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)