suba logo
AT3G55480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protein affected trafficking 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
protein affected trafficking 2 (PAT2); FUNCTIONS IN: binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G11380.1); Has 2700 Blast hits to 1765 proteins in 249 species: Archae - 0; Bacteria - 810; Metazoa - 816; Fungi - 546; Plants - 173; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
Protein Annotations
BioGrid:10030eggNOG:COG5096eggNOG:KOG1060EMBL:AL132975
EMBL:AY059780EMBL:CP002686EnsemblPlants:AT3G55480EnsemblPlants:AT3G55480.1
entrez:824714ExpressionAtlas:Q9M2T1Gene3D:1.25.10.10GeneID:824714
Genevisible:Q9M2T1GO:GO:0005794GO:GO:0006886GO:GO:0016192
GO:GO:0030117GO:GO:0030659HOGENOM:HOG000238694InParanoid:Q9M2T1
InterPro:IPR002553InterPro:IPR011989InterPro:IPR016024InterPro:IPR029390
KEGG:ath:AT3G55480KO:K12397PaxDb:Q9M2T1Pfam:PF01602
Pfam:PF14796Pfam:Q9M2T1PhylomeDB:Q9M2T1PIR:T47687
PRIDE:Q9M2T1PRO:PR:Q9M2T1ProteinModelPortal:Q9M2T1Proteomes:UP000006548
RefSeq:NP_567022.1SMART:SM01355SMR:Q9M2T1STRING:3702.AT3G55480.2
SUPFAM:SSF48371TAIR:AT3G55480tair10-symbols:PAT2UniGene:At.26631
UniGene:At.35023UniProt:Q9M2T1
Coordinates (TAIR10) chr3:-:20566372..20570629
Molecular Weight (calculated) 108656.00 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.05
Length 987 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGIRLHVIA PLALAAVSKC ARDPAVYVRR CAANALPKLH DLRLEEHASA IEELVGILLN DHSPGVVGAA AAAFTSICPN NFKLIGKNYK KLCQILPDVE
101: EWGQILLIGT LLRYVVARHG LVRESLMLSI HGTNSNGFCE KDGLGRDLTL DKEDGGKSDS FDVNLVSLVS KCYIQGPDEY LSRSSCTDTV SSAFDTKETT
201: SIAHNEDVKI LLQCTSPLLW SNNSAVVLAA AGVQWIMAPL EDVKKIVKPL LFLLRSSSAS KYVVLCNILV FAKAVPSLFA PHFENFFICS SDAYQVKAYK
301: LEMLSLIATT SSIASILREF EDYIKDPDRR FAADTVAAIG LCAKRLMTIP TTCLDGLLAL VRQESFAGDF ESADGEAGVL VQAVMSIQTM IERDPLRHEK
401: VLIQLFRSLD SIKVAAARAT IIWMVGVYCS LGHIIPRMLT TITKYLAWSF KSEASETKLQ ILNTIAKVLI SAEAGDFHML KRIVVYVFEL GEYDLSYDIR
501: DRTRFLKKLL SCKLASHEPA EDSVASQENI AAHVVEHVFG RKLKSVSPIT LHNRFYLPGS LSQIVLHAAP GYEPLPKPCS FVYEEQDQLS DLDKQREAAA
601: DLDGSEESSE TGDENGSSDY DSESSNGSDF SSEGDERTVS NDANDPAAPL IQISETSVSA DQEELRSRRA LDLWLDDQPS TSNQTPSALN SNQSSYAKIS
701: IGDVGSRVKP KSYSLVDPGN GSGLKVDYAF LSEVSNVSPL HVCVEVLFEN SSAEPILEVN LEDEESMKVA DSSEQTLVGK ANASYNNIPT LIPMEEISCL
801: EPHQSTKRLI QVRFHHHLLP MRLTLHYNEK KVPVKLRPDL GYLVKPFSMS IEEFLATESR LPGMFEYSRR CTFDDHVKDS RTENGKDKFL SICESITLKV
901: LSNSNLHLVS VDLPVANSLE DATGLRLRFS SKILSSEIPL LITITVEGKC TEVLNLTVKI NCEETVFGLN LLNRIANFMV EPSSSAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)