AT3G27530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : golgin candidate 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
golgin candidate 6 (GC6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, Golgi vesicle transport, vesicle fusion with Golgi apparatus; LOCATED IN: cytosol, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uso1/p115 like vesicle tethering protein, C-terminal (InterPro:IPR006955), Armadillo-type fold (InterPro:IPR016024), Uso1/p115 like vesicle tethering protein, head region (InterPro:IPR006953); Has 8674 Blast hits to 6651 proteins in 794 species: Archae - 167; Bacteria - 1154; Metazoa - 4083; Fungi - 784; Plants - 382; Viruses - 31; Other Eukaryotes - 2073 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10193778..10199659 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101840.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.58 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 914 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLASRYKGV VGMVFGDNQS SNEDSYIQRL LDRISNGTLP DDRRTAIVEL QSVVAESNAA QLAFGAAGFP VIVGILKDQR DDLEMVRGAL ETLLGALTPI 101: DHARAQKTEV QAALMNSDLL SREAENITLL LSLLEEEDFY VRYYTLQILT ALLMNSQNRL QEAILTTPRG ITRLMDMLMD REVIRNEALL LLTHLTREAE 201: EIQKIVVFEG AFEKIFSIIK EEGGSDGDVV VQDCLELLNN LLRSSSSNQI LLRETMGFEP IISILKLRGI TYKFTQQKTV NLLSALETIN MLIMGRADTE 301: PGKDSNKLAN RTVLVQKKLL DYLLMLGVES QWAPVAVRCM TFKCIGDLID GHPKNRDILA SKVLGEDRQV EPALNSILRI ILQTSSIQEF VAADYVFKTF 401: CEKNTEGQTM LASTLIPQPH PTSRDHLEDD VHMSFGSMLL RGLCSGEADG DLETCCRAAS ILSHVVKDNL RCKEKALKIV LESPMPSMGT PEPLFQRIVR 501: YLAVASSMKS KEKSSTLGKS YIQQIILKLL VTWTVDCPTA VQCFLDSRHH LTFLLELVTD PAATVCIRGL ASILLGECVI YNKSIENGKD AFSVVDAVGQ 601: KMGLTSYFSK FEEMQNSFIF SPSKKPPQGY KPLTRTPTPS EAEINEVDEV DEMVKGNEDH PMLLSLFDAS FIGLVKSLEG NIRERIVDVY SRPKSEVAVV 701: PADLEQKSGE NEKDYINRLK AFIEKQCSEI QNLLARNAAL AEDVASSGRN EQSQGSEQRA STVMDKVQME SIRRELQETS QRLETVKAEK AKIESEASSN 801: KNMAAKLEFD LKSLSDAYNS LEQANYHLEQ EVKSLKGGES PMQFPDIEAI KEEVRKEAQK ESEDELNDLL VCLGQEESKV EKLSAKLIEL GVDVDKLLED 901: IGDESEAQAE SEED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)