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AT1G55690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.786
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT5G56160.1); Has 2150 Blast hits to 2128 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 576; Fungi - 461; Plants - 801; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AC002328EMBL:BT021992
EMBL:BT046119EMBL:CP002684EnsemblPlants:AT1G55690EnsemblPlants:AT1G55690.1
EnsemblPlants:AT1G55690.2entrez:842018ExpressionAtlas:Q501H5Gene3D:3.40.525.10
GeneID:842018Genevisible:Q501H5GO:GO:0000139GO:GO:0005886
GO:GO:0015031hmmpanther:PTHR23324hmmpanther:PTHR23324:SF84HOGENOM:HOG000196557
InParanoid:Q501H5InterPro:IPR001251InterPro:IPR011074OMA:PVEKERM
PaxDb:Q501H5Pfam:PF00650Pfam:Q501H5Pfscan:PS50191
PhylomeDB:Q501H5PRIDE:Q501H5PRO:PR:Q501H5PROSITE:PS50191
ProteinModelPortal:Q501H5Proteomes:UP000006548RefSeq:NP_849815.1RefSeq:NP_849816.1
SMART:SM00516SMART:SM01100SMR:Q501H5STRING:3702.AT1G55690.1
SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT1G55690UniGene:At.21485
UniProt:Q501H5
Coordinates (TAIR10) chr1:-:20808622..20811831
Molecular Weight (calculated) 72037.60 Da
IEP (calculated) 8.92
GRAVY (calculated) -0.59
Length 625 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGVEEISTL DEFRERRSDF EISEDERRRS KIGNLKKKAI NASTKFTHSL KKRGKRKIDY RVPAVSIEDV RDEKEESVVL EFRRKLLERD LLPPRHDEYH
101: TLLRFLKARD LNIEKTTQLW EEMLRWRKEY GTDTILEDFD FEELEEVLQY YPQGYHGVDK EGRPVYIERL GKAHPSKLMR ITTIDRYLKY HVQEFERALQ
201: EKFPACSIAA KRRICSTTTI LDVQGLGIKN FTPTAANLVA AMSKIDNSYY PETLHRMYIV NAGTGFKKML WPAAQKFLDA KTIAKIHVLE PKSLFKLHEV
301: IDSSQLPEFL GGSCSCFGDG GGCLRSNKGP WNDPEIMKLI YHGESSLFRQ STRKLTDPHY SSSYISIHPS KAIQAETSAA ESISCSDVPS SPTGRLCSAS
401: SHVNSAYEEA RASDVNGYYS CDDKFAIPDK ATNRKGQERQ SQYQMRELNA TTIGLKCETS SPGAPIIRWL HDLRVMIDKI KCENLAKRLL SLMLKLAAVF
501: RYTPLELLRS QTTVSPSSLT EDDSRCSLIS PPPREPTMKD RILPCLERIQ KLEKSYEDIR NKPVAIPVEK ERMLMDSLDR IKSVEFDLDK TKRLLHATVM
601: KQMEITEMLQ NIRDSQLHRR RRLFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)