AT3G24840.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.821 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Sec14p-like phosphatidylinositol transfer family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G39170.1); Has 2612 Blast hits to 2599 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 823; Fungi - 527; Plants - 863; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:9067301..9070256 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66629.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 579 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPALGEILLV PETDKGKSKD YIEVSEDEKI TRTRSRSLKK KAIKASNKLT HSLRKRGKRV ADQYAPIVIE DVRDEEEEKA VNVFRKALVS LDLLPPRHDD 101: YHTMLRFLKA RRFDLEKTVQ MWEEMLKWRK ENGVDTIIQD FVYDEYEEVQ QYYPHGYHGV DREGRPVYIE RLGKIDPGKL MKVTTLERFL RYHVQGFEKT 201: FSEKFPACSI AAKRHINSST TIIDVHGVSW MSFRKLAQDL VMRMQKIDGD NYPETLNQMY IINAGNGFKL VWNTVKGFLD PKTTSKIHVL GNKYRSHLLE 301: IIDPSELPEF LGGNCKCAHE GGCMRFNKGP WNDPEIMKLV RSRDAMYKPK EMGLLENGEV AKLFSLRHVN TDMSSPDGGH VRERESHPEH DKRAQLSNQA 401: EAVGVGRMEQ SDSTSPLPNN LAVERSLTTS LQKVASFLAR FILQLLGSLC LMFRILGRLV NKQPENQLRP ELSVSVSQQQ VPPPQVHPCW LRLQNLETMV 501: TVLCDKPSSI PQEKEDILRD SLDRIKSIEQ DLQKTKKALF LTASKQIELA ECFENLKESS STGMRSCWPR HCRNFQAET |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)