AT5G65290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LMBR1-like membrane protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LMBR1-like membrane protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LMBR1-like membrane protein, conserved region (InterPro:IPR006876); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26089814..26094337 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83172.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.29 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||
| Length | 733 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWVFYLISLP LTLGLVVFTL RYFAGPEIPR YVLITVGYTW FCSVSVIILA PADIWTTLSL QPDHPENGAI SFLWSWSYWS TFLLTWAVVP LIQGFEDAGD 101: FTVSERLKTS VHVNLVFYLV LGFIGLLGLI LLIMMHRNWT GSILGYAMAC SNTFGLVTGA FLLGFGLSEI PKTLWKNADW TTRQKVLSHK IAKIAVKLDN 201: AHQELSNAIV VAQATSTQMS KRDPMRPYMN VIDAMLAKMF REDPSFKPQG GQLGENDMDY DTDEKSMATL RRHLRNAKDE YYRYKSEYLT YVTEALVLED 301: TMKNYERRDA TGWKYISSFR ATRTGKMGNL LDSLEFMWRC ILKKQIQMVL AVVMGIMSAA ILLAEATLLL SKLDLSLFSI LISSVKSDEL LVQAFAFVPL 401: VYMCVCTYYS LFKIGMLMIY SLTPRQTSSV NLLMICSMIA RYAPPISYNF INLIQLHSET IFEKKMGRID DAVPVFGQRF NEIYPLIMVI YTLLVASNFF 501: DRIFNYFGSW KRFRFQTETE DTDGFDPSGL MILKKERTWL EEGQKVGEHV LPLARNFNDV DIEPGSNFSE NSSVEMKMSS SYDIDTLKGS SSKDDMSRKY 601: GSAREAITNK YAAIREQQNK HSPSSMTKPE NMASAKVSLL ETDNSGPSNG QGSGEPSSRL ASTWRNMKLG IQSFKENVAT KKFLPLRQSP ETTALTSTRV 701: VTSSVPQSLD EIFQRLKNRS VEHSPYLDDD DEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)