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AT2G43240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.738
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP/CMP-sugar transporter (InterPro:IPR021189); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 6 (TAIR:AT3G59360.2); Has 971 Blast hits to 960 proteins in 174 species: Archae - 2; Bacteria - 18; Metazoa - 525; Fungi - 109; Plants - 182; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0697eggNOG:KOG2234EMBL:AC004450EMBL:AK117778
EMBL:AK176729EMBL:AK229359EMBL:AK318703EMBL:CP002685
EnsemblPlants:AT2G43240EnsemblPlants:AT2G43240.1entrez:818925GeneID:818925
GO:GO:0000139GO:GO:0005351GO:GO:0015136GO:GO:0015739
GO:GO:0016021GO:GO:1905039hmmpanther:PTHR10231hmmpanther:PTHR10231:SF25
HOGENOM:HOG000006415InParanoid:Q8GY97InterPro:IPR007271KEGG:ath:AT2G43240
OMA:RNGVLECPANTHER:PTHR10231PaxDb:Q8GY97Pfam:PF04142
Pfam:Q8GY97PhylomeDB:Q8GY97PIR:G84863PIRSF:PIRSF005799
PRIDE:Q8GY97PRO:PR:Q8GY97ProteinModelPortal:Q8GY97Proteomes:UP000006548
RefSeq:NP_001118506.1RefSeq:NP_181853.3STRING:3702.AT2G43240.1SUPFAM:0043518
TAIR:AT2G43240TMHMM:TMhelixUniGene:At.71034UniProt:Q8GY97
Coordinates (TAIR10) chr2:-:17971280..17975300
Molecular Weight (calculated) 44965.50 Da
IEP (calculated) 9.97
GRAVY (calculated) 0.39
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNGMAECSV CRSRLVSPSS KAISRAYDNY NYKIRVSSKQ RALNVFLVVG DCMLVGLQPV LVYMSKVDGK FNFSPISVNF LTEIAKVIFA MVMLLFQARH
101: QKVGEKPLLS LSTFVQAARN NMLLAVPAGL YAINNYLKFT MQLYFNPATV KMLSNLKVLV IAVLLKMIMK RRFSIIQWEA LALLLIGISI NQLRSLPEGA
201: TTVAVPIATG AYICTFIFVT VPSLASVYNE YALKSQYDTS IYLQNLFLYG YGAIFNFLGI LGTVIYKGPG SFDILQGHSR ATMFLILNNA AQGILSSFFF
301: KYADTILKKY SSTVATIFTG IASAALFGHI LTMNFLLGIS IVFISMHQFF SPLSKAKDEQ QNGNIELVDA KDGHRAKDSF INMAAGATEE ASHRIESDDR
401: VPLLPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)