AT2G43240.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.738 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Nucleotide-sugar transporter family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP/CMP-sugar transporter (InterPro:IPR021189); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 6 (TAIR:AT3G59360.2); Has 971 Blast hits to 960 proteins in 174 species: Archae - 2; Bacteria - 18; Metazoa - 525; Fungi - 109; Plants - 182; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:17971280..17975300 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 44965.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.97 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.39 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 406 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKNGMAECSV CRSRLVSPSS KAISRAYDNY NYKIRVSSKQ RALNVFLVVG DCMLVGLQPV LVYMSKVDGK FNFSPISVNF LTEIAKVIFA MVMLLFQARH 101: QKVGEKPLLS LSTFVQAARN NMLLAVPAGL YAINNYLKFT MQLYFNPATV KMLSNLKVLV IAVLLKMIMK RRFSIIQWEA LALLLIGISI NQLRSLPEGA 201: TTVAVPIATG AYICTFIFVT VPSLASVYNE YALKSQYDTS IYLQNLFLYG YGAIFNFLGI LGTVIYKGPG SFDILQGHSR ATMFLILNNA AQGILSSFFF 301: KYADTILKKY SSTVATIFTG IASAALFGHI LTMNFLLGIS IVFISMHQFF SPLSKAKDEQ QNGNIELVDA KDGHRAKDSF INMAAGATEE ASHRIESDDR 401: VPLLPR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)