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AT1G80360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.805
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase (TAIR:AT2G22250.1); Has 39039 Blast hits to 39038 proteins in 3030 species: Archae - 1022; Bacteria - 27880; Metazoa - 604; Fungi - 771; Plants - 1310; Viruses - 0; Other Eukaryotes - 7452 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G80360-MONOMERBioCyc:MetaCyc:AT1G80360-MONOMEReggNOG:COG0436eggNOG:KOG0257
EMBL:AC018848EMBL:AY093159EMBL:BT008854EMBL:CP002684
EnsemblPlants:AT1G80360EnsemblPlants:AT1G80360.1entrez:844376Gene3D:3.40.640.10
Gene3D:3.90.1150.10GeneID:844376GO:GO:0005737GO:GO:0005829
GO:GO:0009641GO:GO:0009851GO:GO:0010326GO:GO:0010366
GO:GO:0030170GO:GO:1901997Gramene:AT1G80360.1hmmpanther:PTHR11751
hmmpanther:PTHR11751:SF184HOGENOM:HOG000223064InterPro:IPR004838InterPro:IPR004839
InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424KEGG:ath:AT1G80360
OMA:NHEMAIRPfam:PF00155PhylomeDB:Q9C969PIR:C96835
PROSITE:PS00105Proteomes:UP000006548RefSeq:NP_178152.1scanprosite:PS00105
SMR:Q9C969STRING:3702.AT1G80360.1SUPFAM:SSF53383TAIR:AT1G80360
UniGene:At.33916UniProt:Q9C969
Coordinates (TAIR10) chr1:-:30208736..30210643
Molecular Weight (calculated) 43764.10 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.08
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSFGMLSRR TLGTDMPVMA QIRSLMAELT NPMSLAQGVV HWQPPQKALE KVKELVWDPI ISSYGPDEGL PELRQALLKK LREENKLTNS QVMVTAGANQ
101: AFVNLVITLC DAGDSVVMFE PYYFNSYMAF QMTGVTNIIV GPGQSDTLYP DADWLERTLS ESKPTPKVVT VVNPGNPSGT YVPEPLLKRI AQICKDAGCW
201: LIVDNTYEYF MYDGLKHCCV EGDHIVNVFS FSKTYGMMGW RLGYIAYSER LDGFATELVK IQDNIPICAA IISQRLAVYA LEEGSGWITE RVKSLVKNRD
301: IVKEALEPLG KENVKGGEGA IYLWAKLPEG HRDDFKVVRW LAHRHGVVVI PGCASGSPGY LRVSFGGLQE VEMRAAAARL RKGIEELLHH GMVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)